RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 DMAC2Q9NW81 257 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 VANGL2Q9ULK5 521 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 A0A0D9SEW6 157 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 CACNB4O00305 520 aaPredicted RBP16.23■□□□□ 0.19
VPS53-218ENST00000575207 ZNF185O15231 689 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 NDUFA10O95299 355 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 MT-ND3P03897 115 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 RHOCP08134 193 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 HOXC4P09017 264 aaPredicted RBP16.23■□□□□ 0.19
VPS53-218ENST00000575207 ITIH2P19823 946 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 FECHP22830 423 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 GLRBP48167 497 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 TMEM52BQ4KMG9 183 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 LRRC73Q5JTD7 316 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 RETSATQ6NUM9 610 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 SETD3Q86TU7 594 aaPredicted RBP16.23■□□□□ 0.19
VPS53-218ENST00000575207 CCDC150Q8NCX0 1101 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 CHDHQ8NE62 594 aaPredicted RBP16.23■□□□□ 0.19
VPS53-218ENST00000575207 RUFY1Q96T51 708 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 COQ6Q9Y2Z9 468 aa16.23■□□□□ 0.19
VPS53-218ENST00000575207 O00370 1275 aa16.22■□□□□ 0.19
VPS53-218ENST00000575207 ZMPSTE24O75844 475 aa16.22■□□□□ 0.19
VPS53-218ENST00000575207 TRUB2O95900 331 aaKnown RBP16.22■□□□□ 0.19
VPS53-218ENST00000575207 UGT2B4P06133 528 aa16.22■□□□□ 0.19
VPS53-218ENST00000575207 ANKRD34CP0C6C1 535 aa16.22■□□□□ 0.19
VPS53-218ENST00000575207 RPS18P62269 152 aaKnown RBP16.22■□□□□ 0.19
VPS53-218ENST00000575207 PPP2R2AP63151 447 aa16.22■□□□□ 0.19
VPS53-218ENST00000575207 ILF3Q12906 894 aaKnown RBP eCLIP16.22■□□□□ 0.19
VPS53-218ENST00000575207 IL11RAQ14626 422 aa16.22■□□□□ 0.19
VPS53-218ENST00000575207 VWA5B1Q5TIE3 1220 aa16.22■□□□□ 0.19
VPS53-218ENST00000575207 ADAMTS17Q8TE56 1095 aa16.22■□□□□ 0.19
VPS53-218ENST00000575207 CHTF18Q8WVB6 975 aa16.22■□□□□ 0.19
VPS53-218ENST00000575207 ISG20Q96AZ6 181 aaKnown RBP16.22■□□□□ 0.19
VPS53-218ENST00000575207 HSFY1Q96LI6 401 aa16.22■□□□□ 0.19
VPS53-218ENST00000575207 KLHL32Q96NJ5 620 aa16.22■□□□□ 0.19
VPS53-218ENST00000575207 OSBPL1AQ9BXW6 950 aa16.22■□□□□ 0.19
VPS53-218ENST00000575207 PRSS38A1L453 326 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 A6NL46 340 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 TMEM63AO94886 807 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 PCCBP05166 539 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 SLC2A3P11169 496 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 FASLGP48023 281 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 KNOP1Q1ED39 458 aaKnown RBP16.21■□□□□ 0.19
VPS53-218ENST00000575207 LYPLAL1Q5VWZ2 237 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 Q6ZS92 163 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 SLC9A9Q8IVB4 645 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 PLA2G15Q8NCC3 412 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 OR6K2Q8NGY2 324 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 GOLGA5Q8TBA6 731 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 FAM149B1Q96BN6 582 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 TM6SF2Q9BZW4 377 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 TRNAU1APQ9NX07 287 aaKnown RBP16.21■□□□□ 0.19
VPS53-218ENST00000575207 LNPEPQ9UIQ6 1025 aa16.21■□□□□ 0.19
VPS53-218ENST00000575207 FCF1Q9Y324 198 aaKnown RBP16.21■□□□□ 0.19
VPS53-218ENST00000575207 F5H423 210 aaPredicted RBP16.2■□□□□ 0.18
VPS53-218ENST00000575207 AK4P27144 223 aaPredicted RBP16.2■□□□□ 0.18
VPS53-218ENST00000575207 TRIM23P36406 574 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 PEX6Q13608 980 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 ANO6Q4KMQ2 910 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 DCAF10Q5QP82 559 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 LCLAT1Q6UWP7 414 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 CUZD1Q86UP6 607 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 RASGRP3Q8IV61 690 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 TMEM102Q8N9M5 508 aaPredicted RBP16.2■□□□□ 0.18
VPS53-218ENST00000575207 SLC38A3Q99624 504 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 FOXC2Q99958 501 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 PANK2Q9BZ23 570 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 MIS12Q9H081 205 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 PCDHGB6Q9Y5F9 930 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 ST14Q9Y5Y6 855 aa16.2■□□□□ 0.18
VPS53-218ENST00000575207 SART1O43290 800 aaKnown RBP16.19■□□□□ 0.18
VPS53-218ENST00000575207 CD160O95971 181 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 VDRP11473 427 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 FGF5P12034 268 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 CCR1P32246 355 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 RPS15P62841 145 aaKnown RBP16.19■□□□□ 0.18
VPS53-218ENST00000575207 PITX1P78337 314 aaPredicted RBP16.19■□□□□ 0.18
VPS53-218ENST00000575207 ALFQ53S48 1182 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 RPTNQ6XPR3 784 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 MED25Q71SY5 747 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 ZNF761Q86XN6 746 aaPredicted RBP16.19■□□□□ 0.18
VPS53-218ENST00000575207 FAR1Q8WVX9 515 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 NCSTNQ92542 709 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 EEF2KMTQ96G04 330 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 CCDC120Q96HB5 630 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 TRIM62Q9BVG3 475 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 CARS2Q9HA77 564 aaKnown RBP16.19■□□□□ 0.18
VPS53-218ENST00000575207 ARHGEF38Q9NXL2 777 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 SUCOQ9UBS9 1254 aaKnown RBP16.19■□□□□ 0.18
VPS53-218ENST00000575207 MOSPD1Q9UJG1 213 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 HS3ST4Q9Y661 456 aa16.19■□□□□ 0.18
VPS53-218ENST00000575207 ANKRD36A6QL64 1941 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 C19orf84I3L1E1 186 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 KRIT1O00522 736 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 SPAG6O75602 509 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 ADCY5O95622 1261 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 POP4O95707 220 aaKnown RBP16.18■□□□□ 0.18
VPS53-218ENST00000575207 PLEKP08567 350 aaPredicted RBP16.18■□□□□ 0.18
VPS53-218ENST00000575207 CD19P15391 556 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 GCLMP48507 274 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms