RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 LIG3P49916 1009 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 PGDP52209 483 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 KIAA1024LP59773 190 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 PAK1Q13153 545 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 RAPGEF1Q13905 1077 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 ANKRD40Q6AI12 368 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 RWDD4Q6NW29 188 aaKnown RBP11.12□□□□□ -0.63
VPS53-207ENST00000570510 TTI2Q6NXR4 508 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 TMEM71Q6P5X7 295 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 SLC30A9Q6PML9 568 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 NYAP1Q6ZVC0 841 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 FAM183BPQ6ZVS7 135 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 SMYD4Q8IYR2 804 aaPredicted RBP11.12□□□□□ -0.63
VPS53-207ENST00000570510 OR10G6Q8NH81 332 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 ARHGEF2Q92974 986 aaKnown RBP11.12□□□□□ -0.63
VPS53-207ENST00000570510 FAM81BQ96LP2 452 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 CPXM1Q96SM3 734 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 TWSG1Q9GZX9 223 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 CLSTN2Q9H4D0 955 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 SLAMF7Q9NQ25 335 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 SPATS2LQ9NUQ6 558 aaKnown RBP11.12□□□□□ -0.63
VPS53-207ENST00000570510 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS53-207ENST00000570510 RWDD2AQ9UIY3 292 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 MRPS18BQ9Y676 258 aaKnown RBP11.12□□□□□ -0.63
VPS53-207ENST00000570510 OAS3Q9Y6K5 1087 aaKnown RBP11.12□□□□□ -0.63
VPS53-207ENST00000570510 FBN2P35556 2912 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 LRBAP50851 2863 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 CELSR2Q9HCU4 2923 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 IGLV3-10A0A075B6K4 115 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 IGHV1OR21-1A0A087WYE8 117 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 CXorf51AA0A1B0GTR3 108 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 PRSS38A1L453 326 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 PIPSLA2A3N6 862 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 CDC14CA4D256 554 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 A6NCN8 305 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 PPP1R3GB7ZBB8 358 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 MBD3O95983 291 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 FGF1P05230 155 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 ACVRL1P37023 503 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 STAT5AP42229 794 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 RHOAP61586 193 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 GPLD1P80108 840 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 MC2RQ01718 297 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 SLC6A3Q01959 620 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 C1QL3Q5VWW1 255 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 KCTD16Q68DU8 428 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 TIPARPQ7Z3E1 657 aaKnown RBP11.11□□□□□ -0.63
VPS53-207ENST00000570510 ZNF438Q7Z4V0 828 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 PASD1Q8IV76 773 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 ARHGEF19Q8IW93 802 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 ZNF683Q8IZ20 524 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 SLC34A3Q8N130 599 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 FUBP1Q96AE4 644 aaKnown RBP11.11□□□□□ -0.63
VPS53-207ENST00000570510 C5orf34Q96MH7 638 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 SLC38A3Q99624 504 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 TTYH3Q9C0H2 523 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 WDR26Q9H7D7 661 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 TAAR2Q9P1P5 351 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 DNAI1Q9UI46 699 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 MAP4K5Q9Y4K4 846 aa11.11□□□□□ -0.63
VPS53-207ENST00000570510 CRYBG3Q68DQ2 2970 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 ZSCAN5CA6NGD5 496 aaPredicted RBP11.1□□□□□ -0.63
VPS53-207ENST00000570510 TCP11X1B4DZS4 312 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 RAMP2O60895 175 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 LRCH4O75427 683 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 PTMSP20962 102 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 CASP14P31944 242 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 PMS2P54278 862 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 MRPL49Q13405 166 aaKnown RBP11.1□□□□□ -0.63
VPS53-207ENST00000570510 ESPL1Q14674 2120 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 NR1D2Q14995 579 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 INPP5JQ15735 1006 aaPredicted RBP11.1□□□□□ -0.63
VPS53-207ENST00000570510 UGP2Q16851 508 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 OLFML1Q6UWY5 402 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 SLC26A9Q7LBE3 791 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 ZC3H18Q86VM9 953 aaKnown RBP11.1□□□□□ -0.63
VPS53-207ENST00000570510 TP53INP2Q8IXH6 220 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 PLA2G15Q8NCC3 412 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 EHBP1Q8NDI1 1231 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 PDCD6IPQ8WUM4 868 aaKnown RBP11.1□□□□□ -0.63
VPS53-207ENST00000570510 ULBP3Q9BZM4 244 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 NUP62CLQ9H1M0 184 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 MAGEH1Q9H213 219 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 RUBCNLQ9H714 662 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 UBE2TQ9NPD8 197 aaPredicted RBP11.1□□□□□ -0.63
VPS53-207ENST00000570510 PCDH12Q9NPG4 1184 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 ANLNQ9NQW6 1124 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 FBXO8Q9NRD0 319 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 LMBRD1Q9NUN5 540 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 TMEM9Q9P0T7 183 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 KCND3Q9UK17 655 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 PHTF1Q9UMS5 762 aa11.1□□□□□ -0.63
VPS53-207ENST00000570510 TMEM184BQ9Y519 407 aaPredicted RBP11.1□□□□□ -0.63
VPS53-207ENST00000570510 SPENQ96T58 3664 aaKnown RBP11.1□□□□□ -0.63
VPS53-207ENST00000570510 PPM1DO15297 605 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 RECQL5O94762 991 aaPredicted RBP11.09□□□□□ -0.63
VPS53-207ENST00000570510 TMCC1O94876 653 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 CD160O95971 181 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 ELFN1P0C7U0 828 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 CCNYL3P0C7X3 344 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms