RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 MARK2Q7KZI7 788 aaKnown RBP30.66■■■□□ 2.5
CTCF-203ENST00000566078 NDUFAF2Q8N183 169 aa30.66■■■□□ 2.5
CTCF-203ENST00000566078 TTC30BQ8N4P2 665 aa30.66■■■□□ 2.5
CTCF-203ENST00000566078 OR13C4Q8NGS5 318 aa30.66■■■□□ 2.5
CTCF-203ENST00000566078 STYXQ8WUJ0 223 aa30.66■■■□□ 2.5
CTCF-203ENST00000566078 PEX13Q92968 403 aa30.66■■■□□ 2.5
CTCF-203ENST00000566078 ATP6V1G3Q96LB4 118 aa30.66■■■□□ 2.5
CTCF-203ENST00000566078 TRABDQ9H4I3 376 aa30.66■■■□□ 2.5
CTCF-203ENST00000566078 RIMKLBQ9ULI2 386 aa30.66■■■□□ 2.5
CTCF-203ENST00000566078 GOLGA8TH3BQL2 631 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 CCL22O00626 93 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 UGT1A9O60656 530 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 RNF40O75150 1001 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 ARNTP27540 789 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 HNF1BP35680 557 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 ARCN1P48444 511 aaKnown RBP30.65■■■□□ 2.5
CTCF-203ENST00000566078 GRSF1Q12849 480 aaKnown RBP eCLIP30.65■■■□□ 2.5
CTCF-203ENST00000566078 NAB1Q13506 487 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 ENPP2Q13822 863 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 KCTD16Q68DU8 428 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 ADGRD1Q6QNK2 874 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 LYSMD3Q7Z3D4 306 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 SPOCK2Q92563 424 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 PKNOX2Q96KN3 472 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 UGT1A7Q9HAW7 530 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 UGT1A10Q9HAW8 530 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 UGT1A8Q9HAW9 530 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 IARS2Q9NSE4 1012 aaKnown RBP30.65■■■□□ 2.5
CTCF-203ENST00000566078 POLR3BQ9NW08 1133 aaPredicted RBP30.65■■■□□ 2.5
CTCF-203ENST00000566078 A0A0U1RQS6 177 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 TSPAN11A1L157 253 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 GLULP15104 373 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 DRD1P21728 446 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 PDE1BQ01064 536 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 POM121L1PQ3SYA9 428 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 ZNF805Q5CZA5 627 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 USP45Q70EL2 814 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 SLC26A11Q86WA9 606 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 ERLEC1Q96DZ1 483 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 SRPK1Q96SB4 655 aaKnown RBP30.65■■■□□ 2.5
CTCF-203ENST00000566078 GPR63Q9BZJ6 419 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 PRSS16Q9NQE7 514 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 PPIL1Q9Y3C6 166 aa30.65■■■□□ 2.5
CTCF-203ENST00000566078 FAM155BO75949 473 aa30.64■■■□□ 2.5
CTCF-203ENST00000566078 LPOP22079 712 aaPredicted RBP30.64■■■□□ 2.5
CTCF-203ENST00000566078 OAS2P29728 719 aaKnown RBP30.64■■■□□ 2.5
CTCF-203ENST00000566078 ARSDP51689 593 aa30.64■■■□□ 2.5
CTCF-203ENST00000566078 POLR2LP62875 67 aaKnown RBP30.64■■■□□ 2.5
CTCF-203ENST00000566078 ACVR1Q04771 509 aa30.64■■■□□ 2.5
CTCF-203ENST00000566078 RASA2Q15283 850 aa30.64■■■□□ 2.5
CTCF-203ENST00000566078 OR4K2Q8NGD2 314 aa30.64■■■□□ 2.5
CTCF-203ENST00000566078 MSANTD3Q96H12 275 aa30.64■■■□□ 2.5
CTCF-203ENST00000566078 AGAP2Q99490 1192 aa30.64■■■□□ 2.5
CTCF-203ENST00000566078 NLE1Q9NVX2 485 aaPredicted RBP30.64■■■□□ 2.5
CTCF-203ENST00000566078 GGT7Q9UJ14 662 aa30.64■■■□□ 2.5
CTCF-203ENST00000566078 SARDHQ9UL12 918 aa30.64■■■□□ 2.5
CTCF-203ENST00000566078 LRRK1Q38SD2 2015 aa30.64■■■□□ 2.5
CTCF-203ENST00000566078 KPNA3O00505 521 aaPredicted RBP30.63■■■□□ 2.49
CTCF-203ENST00000566078 RPP40O75818 363 aaKnown RBP30.63■■■□□ 2.49
CTCF-203ENST00000566078 PRAMEP78395 509 aa30.63■■■□□ 2.49
CTCF-203ENST00000566078 C2orf27AQ580R0 203 aa30.63■■■□□ 2.49
CTCF-203ENST00000566078 LRRC73Q5JTD7 316 aa30.63■■■□□ 2.49
CTCF-203ENST00000566078 TEDDM1Q5T9Z0 273 aa30.63■■■□□ 2.49
CTCF-203ENST00000566078 MICALCLQ6ZW33 695 aa30.63■■■□□ 2.49
CTCF-203ENST00000566078 CYP4X1Q8N118 509 aa30.63■■■□□ 2.49
CTCF-203ENST00000566078 TMIEQ8NEW7 156 aa30.63■■■□□ 2.49
CTCF-203ENST00000566078 PIP4K2CQ8TBX8 421 aa30.63■■■□□ 2.49
CTCF-203ENST00000566078 HDAC10Q969S8 669 aa30.63■■■□□ 2.49
CTCF-203ENST00000566078 SCRN2Q96FV2 425 aa30.63■■■□□ 2.49
CTCF-203ENST00000566078 FAM129BQ96TA1 746 aa30.63■■■□□ 2.49
CTCF-203ENST00000566078 STMN4Q9H169 189 aaPredicted RBP30.63■■■□□ 2.49
CTCF-203ENST00000566078 DKK3Q9UBP4 350 aa30.63■■■□□ 2.49
CTCF-203ENST00000566078 NOVA2Q9UNW9 492 aaKnown RBP30.63■■■□□ 2.49
CTCF-203ENST00000566078 C1orf232A0A0U1RR37 186 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 NPIPB15A6NHN6 443 aaPredicted RBP30.62■■■□□ 2.49
CTCF-203ENST00000566078 HMGB1P1B2RPK0 211 aaPredicted RBP30.62■■■□□ 2.49
CTCF-203ENST00000566078 CHRM1P11229 460 aaPredicted RBP30.62■■■□□ 2.49
CTCF-203ENST00000566078 THOC5Q13769 683 aaKnown RBP30.62■■■□□ 2.49
CTCF-203ENST00000566078 ADHFE1Q8IWW8 467 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 MCCC1Q96RQ3 725 aaPredicted RBP30.62■■■□□ 2.49
CTCF-203ENST00000566078 LYSMD1Q96S90 227 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 PPM1HQ9ULR3 514 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 DUSP12Q9UNI6 340 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 PSAT1Q9Y617 370 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 SEMG2Q02383 582 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 UGP2Q16851 508 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 SLC44A4Q53GD3 710 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 TPRG1Q6ZUI0 275 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 DSG4Q86SJ6 1040 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 OR6P1Q8NGX9 317 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 HCAR2Q8TDS4 363 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 TBATAQ96M53 351 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 ZFYVE1Q9HBF4 777 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 ZNF180Q9UJW8 692 aa30.62■■■□□ 2.49
CTCF-203ENST00000566078 C16orf96A6NNT2 1141 aa30.61■■■□□ 2.49
CTCF-203ENST00000566078 A8MX80 341 aa30.61■■■□□ 2.49
CTCF-203ENST00000566078 UPK3BL1B0FP48 263 aa30.61■■■□□ 2.49
CTCF-203ENST00000566078 UPK3BL2E5RIL1 263 aa30.61■■■□□ 2.49
CTCF-203ENST00000566078 STX7O15400 261 aaKnown RBP30.61■■■□□ 2.49
CTCF-203ENST00000566078 IL1BP01584 269 aa30.61■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms