RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PID1Q7Z2X4 250 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 C1orf216Q8TAB5 229 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 UBL7Q96S82 380 aaPredicted RBP17.35■□□□□ 0.37
CLN3-217ENST00000565354 BTBD3Q9Y2F9 522 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 RAI2Q9Y5P3 530 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 A0A1B0GVT2 93 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 TSPAN11A1L157 253 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 MAST4O15021 2626 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 IGHV4-34P06331 123 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 CD27P26842 260 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 CD86P42081 329 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 TNNT3P45378 269 aaPredicted RBP17.34■□□□□ 0.37
CLN3-217ENST00000565354 GNG11P61952 73 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 RPS21P63220 83 aaKnown RBP17.34■□□□□ 0.37
CLN3-217ENST00000565354 TRAF2Q12933 501 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 KLF1Q13351 362 aaPredicted RBP17.34■□□□□ 0.37
CLN3-217ENST00000565354 SUZ12Q15022 739 aaKnown RBP17.34■□□□□ 0.37
CLN3-217ENST00000565354 LONRF2Q1L5Z9 754 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 SETMARQ53H47 684 aaPredicted RBP17.34■□□□□ 0.37
CLN3-217ENST00000565354 ALG1LQ6GMV1 187 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 TRIM69Q86WT6 500 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 HORMAD1Q86X24 394 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 CNTD1Q8N815 330 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 PDCD7Q8N8D1 485 aaKnown RBP17.34■□□□□ 0.37
CLN3-217ENST00000565354 TEKT5Q96M29 485 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 SLC25A51Q9H1U9 297 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 C10orf88Q9H8K7 445 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 GLOD4Q9HC38 313 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 TRHDEQ9UKU6 1024 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 PHTF1Q9UMS5 762 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 ITM2BQ9Y287 266 aa17.34■□□□□ 0.37
CLN3-217ENST00000565354 A0A1W2PPC4 97 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 TCRBV7S2A1N4TA0A589 114 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 FAM149AA5PLN7 773 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 TRAFD1O14545 582 aaPredicted RBP17.33■□□□□ 0.36
CLN3-217ENST00000565354 TNFSF14O43557 240 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 FGGP02679 453 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 PRKCGP05129 697 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 NUDT1P36639 197 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 CSNK1EP49674 416 aaKnown RBP17.33■□□□□ 0.36
CLN3-217ENST00000565354 AFF3P51826 1226 aaKnown RBP17.33■□□□□ 0.36
CLN3-217ENST00000565354 NIPAL4Q0D2K0 466 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 C19orf57Q0VDD7 668 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 WASHC5Q12768 1159 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 SGCGQ13326 291 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 SMAD1Q15797 465 aaKnown RBP17.33■□□□□ 0.36
CLN3-217ENST00000565354 FAM182AQ5T1J6 154 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 ITPRIPL1Q6GPH6 555 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 ZSCAN30Q86W11 494 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 ARRDC2Q8TBH0 407 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 KLK6Q92876 244 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 VOPP1Q96AW1 172 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 ECHDC3Q96DC8 303 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 TRIM44Q96DX7 344 aaPredicted RBP17.33■□□□□ 0.36
CLN3-217ENST00000565354 PBKQ96KB5 322 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 RBM15Q96T37 977 aaKnown RBP eCLIP17.33■□□□□ 0.36
CLN3-217ENST00000565354 FRMD8P1Q9BZ68 369 aaPredicted RBP17.33■□□□□ 0.36
CLN3-217ENST00000565354 PCDH12Q9NPG4 1184 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 AASDHPPTQ9NRN7 309 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 RSPH14Q9UHP6 348 aa17.33■□□□□ 0.36
CLN3-217ENST00000565354 R3HDM2Q9Y2K5 976 aaKnown RBP17.33■□□□□ 0.36
CLN3-217ENST00000565354 TP53BP1Q12888 1972 aaPredicted RBP17.33■□□□□ 0.36
CLN3-217ENST00000565354 ZNF462Q96JM2 2506 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 HTRA2O43464 458 aaPredicted RBP17.32■□□□□ 0.36
CLN3-217ENST00000565354 PGLSO95336 258 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 PRB1P04280 392 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 ATP1A1P05023 1023 aaKnown RBP17.32■□□□□ 0.36
CLN3-217ENST00000565354 ITIH2P19823 946 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 NFKB1P19838 968 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 ABCG1P45844 678 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 TEAD4Q15561 434 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 PCSK7Q16549 785 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 ZSWIM9Q86XI8 627 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 ZNF567Q8N184 647 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 IFT43Q96FT9 208 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 SERAC1Q96JX3 654 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 NSMCE3Q96MG7 304 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 WRAP53Q9BUR4 548 aaKnown RBP17.32■□□□□ 0.36
CLN3-217ENST00000565354 TDRD1Q9BXT4 1180 aaKnown RBP17.32■□□□□ 0.36
CLN3-217ENST00000565354 PCDH9Q9HC56 1237 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 GGT7Q9UJ14 662 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 DMTF1Q9Y222 760 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 CHKBQ9Y259 395 aa17.32■□□□□ 0.36
CLN3-217ENST00000565354 TENM4Q6N022 2769 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 CFAP69A5D8W1 941 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 F5H423 210 aaPredicted RBP17.31■□□□□ 0.36
CLN3-217ENST00000565354 TK2O00142 265 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 RIOK3O14730 519 aaKnown RBP17.31■□□□□ 0.36
CLN3-217ENST00000565354 AREL1O15033 823 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 SLC31A1O15431 190 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 CYP2A6P11509 494 aaPredicted RBP17.31■□□□□ 0.36
CLN3-217ENST00000565354 AKT2P31751 481 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 GRK6P43250 576 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 SKOR1P84550 965 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 PRPSAP1Q14558 356 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 KIF19Q2TAC6 998 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 SEL1L3Q68CR1 1132 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 CCDC70Q6NSX1 233 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 USP45Q70EL2 814 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 LPCAT1Q8NF37 534 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms