RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 CRTC1Q6UUV9 634 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 H2AFVQ71UI9 128 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 GKN2Q86XP6 184 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 OR8K1Q8NGG5 319 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 FUBP1Q96AE4 644 aaKnown RBP22.54■■□□□ 1.2
CLN3-215ENST00000565236 ZNHIT6Q9NWK9 470 aaKnown RBP22.54■■□□□ 1.2
CLN3-215ENST00000565236 PHTF1Q9UMS5 762 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 NENFQ9UMX5 172 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 RP1P56715 2156 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 PROSCO94903 275 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 MPOP05164 745 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 ABCG1P45844 678 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 ARSEP51690 589 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 KIAA1024LP59773 190 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 DPYSL3Q14195 570 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 SLC18A3Q16572 532 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 ISXQ2M1V0 245 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 TSR1Q2NL82 804 aaKnown RBP22.53■■□□□ 1.2
CLN3-215ENST00000565236 SPECC1LQ69YQ0 1117 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 NYAP1Q6ZVC0 841 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 MAP7D3Q8IWC1 876 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 LSMEM2Q8N112 164 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 OR56A4Q8NGH8 313 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 PCDH19Q8TAB3 1148 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 SNIP1Q8TAD8 396 aaKnown RBP22.53■■□□□ 1.2
CLN3-215ENST00000565236 DEF6Q9H4E7 631 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 NT5MQ9NPB1 228 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 SIRPGQ9P1W8 387 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 LCMT1Q9UIC8 334 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 GPR34Q9UPC5 381 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 DGKBQ9Y6T7 804 aa22.53■■□□□ 1.2
CLN3-215ENST00000565236 TMEM202A6NGA9 273 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 HOXC4P09017 264 aaPredicted RBP22.52■■□□□ 1.2
CLN3-215ENST00000565236 CYP2A6P11509 494 aaPredicted RBP22.52■■□□□ 1.2
CLN3-215ENST00000565236 GM2AP17900 193 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 VIPR1P32241 457 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 TRIM23P36406 574 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 GABREP78334 506 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 ITKQ08881 620 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 TRAF2Q12933 501 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 TRIM14Q14142 442 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 PDK2Q15119 407 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 TBC1D25Q3MII6 688 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 ARMC12Q5T9G4 340 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 DENND2CQ68D51 928 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 PNCKQ6P2M8 343 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 RBM44Q6ZP01 1051 aaKnown RBP22.52■■□□□ 1.2
CLN3-215ENST00000565236 ARL10Q8N8L6 244 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 WDR48Q8TAF3 677 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 PDXPQ96GD0 296 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 COQ10AQ96MF6 247 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 RBM15Q96T37 977 aaKnown RBP eCLIP22.52■■□□□ 1.2
CLN3-215ENST00000565236 PACSIN1Q9BY11 444 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 WDR26Q9H7D7 661 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 POLR1BQ9H9Y6 1135 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 KCTD5Q9NXV2 234 aa22.52■■□□□ 1.2
CLN3-215ENST00000565236 PDE2AO00408 941 aaPredicted RBP22.51■■□□□ 1.19
CLN3-215ENST00000565236 MFSD11O43934 449 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 KRT7P08729 469 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 ITPKBP27987 946 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 GARSP41250 739 aaKnown RBP22.51■■□□□ 1.19
CLN3-215ENST00000565236 LSSP48449 732 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 PAFAH1B3Q15102 231 aaKnown RBP22.51■■□□□ 1.19
CLN3-215ENST00000565236 CNGA3Q16281 694 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 ANKRD20A8PQ5CZ79 823 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 ZFYVE27Q5T4F4 411 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 CPNE8Q86YQ8 564 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 TEX26Q8N6G2 289 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 OR1E3Q8WZA6 343 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 GRAMD1AQ96CP6 724 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 NUS1Q96E22 293 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 SCRN2Q96FV2 425 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 DNAJC7Q99615 494 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 CCDC3Q9BQI4 270 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 ZNF670Q9BS34 389 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 MOSPD1Q9UJG1 213 aa22.51■■□□□ 1.19
CLN3-215ENST00000565236 TNFRSF10CO14798 259 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 AKR1B10O60218 316 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 TCEA3O75764 348 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 HEXIM1O94992 359 aaKnown RBP22.5■■□□□ 1.19
CLN3-215ENST00000565236 PGLSO95336 258 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 TPM1P09493 284 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 KRT10P13645 584 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 TAS2R40P59535 323 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 GALNT2Q10471 571 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 ARHGEF7Q14155 803 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 IFI16Q16666 785 aaKnown RBP22.5■■□□□ 1.19
CLN3-215ENST00000565236 KCTD16Q68DU8 428 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 NCBP2-AS2Q69YL0 99 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 TIGD7Q6NT04 549 aaPredicted RBP22.5■■□□□ 1.19
CLN3-215ENST00000565236 TAF8Q7Z7C8 310 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 NDUFAF2Q8N183 169 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 KYQ8NBH2 561 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 ZNF578Q96N58 590 aaPredicted RBP22.5■■□□□ 1.19
CLN3-215ENST00000565236 SEMA3CQ99985 751 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 LGR4Q9BXB1 951 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 POLR1EQ9GZS1 481 aaKnown RBP22.5■■□□□ 1.19
CLN3-215ENST00000565236 CYP4F12Q9HCS2 524 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 FGF22Q9HCT0 170 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 MRPL40Q9NQ50 206 aaKnown RBP22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms