RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TEX33O43247 280 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 FERP16591 822 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 DESP17661 470 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 TNFAIP3P21580 790 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 SCNN1BP51168 640 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 MYL5Q02045 173 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 ZFP36L1Q07352 338 aaKnown RBP16.92■□□□□ 0.3
CLN3-211ENST00000564091 HLTFQ14527 1009 aaKnown RBP eCLIP16.92■□□□□ 0.3
CLN3-211ENST00000564091 ACOX1Q15067 660 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 C14orf28Q4W4Y0 310 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 PPP6R3Q5H9R7 873 aaPredicted RBP16.92■□□□□ 0.3
CLN3-211ENST00000564091 CERCAMQ5T4B2 595 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 ERMARDQ5T6L9 678 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 RBM43Q6ZSC3 357 aaKnown RBP16.92■□□□□ 0.3
CLN3-211ENST00000564091 DPPA4Q7L190 304 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 APTXQ7Z2E3 356 aaKnown RBP16.92■□□□□ 0.3
CLN3-211ENST00000564091 TMPRSS9Q7Z410 1059 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 IRF2BP2Q7Z5L9 587 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 TRIM7Q9C029 511 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 SUDS3Q9H7L9 328 aaPredicted RBP16.92■□□□□ 0.3
CLN3-211ENST00000564091 PARVAQ9NVD7 372 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 LRIT1Q9P2V4 623 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 COL27A1Q8IZC6 1860 aaPredicted RBP16.91■□□□□ 0.3
CLN3-211ENST00000564091 KELP23276 732 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 TRIM23P36406 574 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 ETV5P41161 510 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 NSUN2Q08J23 767 aaKnown RBP eCLIP16.91■□□□□ 0.3
CLN3-211ENST00000564091 ARHGEF7Q14155 803 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 PLEKHA7Q6IQ23 1121 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 PNCKQ6P2M8 343 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 SPRED1Q7Z699 444 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 EXD3Q8N9H8 876 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 SYT11Q9BT88 431 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 HSD3B7Q9H2F3 369 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 WDR26Q9H7D7 661 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 ANO10Q9NW15 660 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 B4GALT6Q9UBX8 382 aa16.91■□□□□ 0.3
CLN3-211ENST00000564091 PRAMEF33A0A0G2JMD5 474 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 TMEM191CA6NGB0 347 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 EIF3CLB5ME19 914 aaKnown RBP16.9■□□□□ 0.3
CLN3-211ENST00000564091 TNFRSF10CO14798 259 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 NVLO15381 856 aaKnown RBP16.9■□□□□ 0.3
CLN3-211ENST00000564091 PRAMEF10O60809 474 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 HOXC4P09017 264 aaPredicted RBP16.9■□□□□ 0.3
CLN3-211ENST00000564091 CCDC172P0C7W6 258 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 MIPP30301 263 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 POLR2LP62875 67 aaKnown RBP16.9■□□□□ 0.3
CLN3-211ENST00000564091 IL10RBQ08334 325 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 SLC10A7Q0GE19 358 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 RFTN1Q14699 578 aaPredicted RBP16.9■□□□□ 0.3
CLN3-211ENST00000564091 NCAPHQ15003 741 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 SPECC1LQ69YQ0 1117 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 SASS6Q6UVJ0 657 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 CYP4V2Q6ZWL3 525 aaPredicted RBP16.9■□□□□ 0.3
CLN3-211ENST00000564091 USP53Q70EK8 1073 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 ZFAND4Q86XD8 727 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 PSKH2Q96QS6 385 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 EIF3CQ99613 913 aaKnown RBP16.9■□□□□ 0.3
CLN3-211ENST00000564091 SEMA6CQ9H3T2 930 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 CARS2Q9HA77 564 aaKnown RBP16.9■□□□□ 0.3
CLN3-211ENST00000564091 SPATS2LQ9NUQ6 558 aaKnown RBP16.9■□□□□ 0.3
CLN3-211ENST00000564091 FOXJ2Q9P0K8 574 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 SEPT3Q9UH03 358 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 ACSL6Q9UKU0 697 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 PCDHGC4Q9Y5F7 938 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 BSNQ9UPA5 3926 aa16.9■□□□□ 0.3
CLN3-211ENST00000564091 CHD5Q8TDI0 1954 aa16.89■□□□□ 0.3
CLN3-211ENST00000564091 PRSS38A1L453 326 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 B4GAT1O43505 415 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 SLC28A2O43868 658 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 PRPSAP2O60256 369 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 LIPCP11150 499 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 ATP1A3P13637 1013 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 PNLIPP16233 465 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 MAPK10P53779 464 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 MAZP56270 477 aaKnown RBP16.89■□□□□ 0.29
CLN3-211ENST00000564091 AP1S1P61966 158 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 B4GALNT1Q00973 533 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 LBRQ14739 615 aaKnown RBP16.89■□□□□ 0.29
CLN3-211ENST00000564091 KIF26BQ2KJY2 2108 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 LINC00303Q3SY05 128 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 AMZ1Q400G9 498 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 PHF19Q5T6S3 580 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 DENND2CQ68D51 928 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 VASH2Q86V25 355 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 SLITRK4Q8IW52 837 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 PDCD6IPQ8WUM4 868 aaKnown RBP16.89■□□□□ 0.29
CLN3-211ENST00000564091 USP7Q93009 1102 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 SGF29Q96ES7 293 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 COQ10AQ96MF6 247 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 RDH14Q9HBH5 336 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 CWC15Q9P013 229 aaKnown RBP16.89■□□□□ 0.29
CLN3-211ENST00000564091 BOD1L1Q8NFC6 3051 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 SPTA1P02549 2419 aa16.89■□□□□ 0.29
CLN3-211ENST00000564091 NUDT21O43809 227 aaKnown RBP16.88■□□□□ 0.29
CLN3-211ENST00000564091 RNF8O76064 485 aa16.88■□□□□ 0.29
CLN3-211ENST00000564091 FUCA1P04066 466 aa16.88■□□□□ 0.29
CLN3-211ENST00000564091 OR1D5P58170 312 aa16.88■□□□□ 0.29
CLN3-211ENST00000564091 NFATC3Q12968 1075 aa16.88■□□□□ 0.29
CLN3-211ENST00000564091 DPYSQ14117 519 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms