RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CCNI2Q6ZMN8 369 aaPredicted RBP16.63■□□□□ 0.25
VPS4A-202ENST00000562754 CCDC25Q86WR0 208 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 IGDCC3Q8IVU1 814 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 NDUFAF2Q8N183 169 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 CAMKK1Q8N5S9 505 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 GANCQ8TET4 914 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 RAB7BQ96AH8 199 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 TRIM56Q9BRZ2 755 aaKnown RBP16.63■□□□□ 0.25
VPS4A-202ENST00000562754 PHACTR1Q9C0D0 580 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 IL22Q9GZX6 179 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 C11orf16Q9NQ32 467 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 ITM2CQ9NQX7 267 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 HACD3Q9P035 362 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 MTRF1LQ9UGC7 380 aaKnown RBP16.63■□□□□ 0.25
VPS4A-202ENST00000562754 FZD4Q9ULV1 537 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 KCTD3Q9Y597 815 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 ZNF106Q9H2Y7 1883 aaKnown RBP16.63■□□□□ 0.25
VPS4A-202ENST00000562754 SDR42E2A6NKP2 422 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 EIF3HO15372 352 aaKnown RBP eCLIP16.62■□□□□ 0.25
VPS4A-202ENST00000562754 SLC7A4O43246 635 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 PLRG1O43660 514 aaKnown RBP16.62■□□□□ 0.25
VPS4A-202ENST00000562754 LDB2O43679 373 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 AP1G1O43747 822 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 SLC4A1P02730 911 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 CYP2A6P11509 494 aaPredicted RBP16.62■□□□□ 0.25
VPS4A-202ENST00000562754 TDGF1P13385 188 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 ADPRHP54922 357 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 DMWDQ09019 674 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 ELP6Q0PNE2 266 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 HP1BP3Q5SSJ5 553 aaPredicted RBP16.62■□□□□ 0.25
VPS4A-202ENST00000562754 LRRC66Q68CR7 880 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 CENPUQ71F23 418 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 GLT6D1Q7Z4J2 308 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 FAM124AQ86V42 546 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 KBTBD6Q86V97 674 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 DTWD2Q8NBA8 298 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 EID2BQ96D98 161 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 RANBP9Q96S59 729 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 SAYSD1Q9NPB0 183 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.62■□□□□ 0.25
VPS4A-202ENST00000562754 CYP8B1Q9UNU6 501 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 CHMP2BQ9UQN3 213 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 TCAF1Q9Y4C2 921 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 ARL5AQ9Y689 179 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 TEX264Q9Y6I9 313 aa16.62■□□□□ 0.25
VPS4A-202ENST00000562754 C1orf232A0A0U1RR37 186 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 CCDC78A2IDD5 438 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 BUD23O43709 281 aaKnown RBP16.61■□□□□ 0.25
VPS4A-202ENST00000562754 CLDN7O95471 211 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 C1SP09871 688 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 ELK3P41970 407 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 ZNF140P52738 457 aaPredicted RBP16.61■□□□□ 0.25
VPS4A-202ENST00000562754 STC1P52823 247 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 PTPRCAPQ14761 206 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 TAF1AQ15573 450 aaPredicted RBP16.61■□□□□ 0.25
VPS4A-202ENST00000562754 TMEM52BQ4KMG9 183 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 PCID2Q5JVF3 399 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 TSSK4Q6SA08 328 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 ANKMY2Q8IV38 441 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 MAML2Q8IZL2 1156 aaPredicted RBP16.61■□□□□ 0.25
VPS4A-202ENST00000562754 PPHLN1Q8NEY8 458 aaKnown RBP16.61■□□□□ 0.25
VPS4A-202ENST00000562754 BRSK1Q8TDC3 778 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 STAMBPL1Q96FJ0 436 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 ZNF778Q96MU6 729 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 WRAP53Q9BUR4 548 aaKnown RBP16.61■□□□□ 0.25
VPS4A-202ENST00000562754 TRABDQ9H4I3 376 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 PLAC1Q9HBJ0 212 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 SOX13Q9UN79 622 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 NCKAP1Q9Y2A7 1128 aa16.61■□□□□ 0.25
VPS4A-202ENST00000562754 HEATR9A2RTY3 570 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 MROH6A6NGR9 719 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 GM2AP17900 193 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 ADRA1DP25100 572 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 NFKBIAP25963 317 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 HOXA6P31267 233 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 ACSL1P33121 698 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 CCDC15Q0P6D6 951 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 SFSWAPQ12872 951 aaKnown RBP16.6■□□□□ 0.25
VPS4A-202ENST00000562754 CASC4Q6P4E1 433 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 LIPIQ6XZB0 460 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 MICALCLQ6ZW33 695 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 HSD11B1LQ7Z5J1 315 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 TMC3Q7Z5M5 1100 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 ZBED8Q8IZ13 594 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 FBXO36Q8NEA4 188 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 OR14C36Q8NHC7 312 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 AENQ8WTP8 325 aaKnown RBP16.6■□□□□ 0.25
VPS4A-202ENST00000562754 RLN3Q8WXF3 142 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 LRRC39Q96DD0 335 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 SRPK1Q96SB4 655 aaKnown RBP16.6■□□□□ 0.25
VPS4A-202ENST00000562754 EBNA1BP2Q99848 306 aaKnown RBP16.6■□□□□ 0.25
VPS4A-202ENST00000562754 KIFC1Q9BW19 673 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 GPR63Q9BZJ6 419 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 ZFYVE1Q9HBF4 777 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 MRM3Q9HC36 420 aaKnown RBP16.6■□□□□ 0.25
VPS4A-202ENST00000562754 CHRAC1Q9NRG0 131 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 SLC2A6Q9UGQ3 507 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 MAD1L1Q9Y6D9 718 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 PLXNA2O75051 1894 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 TRPM6Q9BX84 2022 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms