RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 MANEAQ5SRI9 462 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 DENND2CQ68D51 928 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 SPECC1LQ69YQ0 1117 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 SASS6Q6UVJ0 657 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 LIPIQ6XZB0 460 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 DPPA4Q7L190 304 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 SFTPA2Q8IWL1 248 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 KIAA1524Q8TCG1 905 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 PDCD6IPQ8WUM4 868 aaKnown RBP13.03□□□□□ -0.32
SF3B3-202ENST00000562722 TMEM159Q96B96 161 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 SGF29Q96ES7 293 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 CARS2Q9HA77 564 aaKnown RBP13.03□□□□□ -0.32
SF3B3-202ENST00000562722 PARVAQ9NVD7 372 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 AKAP7Q9P0M2 348 aaPredicted RBP13.03□□□□□ -0.32
SF3B3-202ENST00000562722 LIMA1Q9UHB6 759 aaKnown RBP13.03□□□□□ -0.32
SF3B3-202ENST00000562722 GOLGA6CA6NDK9 693 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 GOLGA6BA6NDN3 693 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 RHPN2P1A8MT19 583 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 EIF3CLB5ME19 914 aaKnown RBP13.02□□□□□ -0.33
SF3B3-202ENST00000562722 PDE2AO00408 941 aaPredicted RBP13.02□□□□□ -0.33
SF3B3-202ENST00000562722 TNFRSF10CO14798 259 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 NVLO15381 856 aaKnown RBP13.02□□□□□ -0.33
SF3B3-202ENST00000562722 EFSO43281 561 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 PRPSAP2O60256 369 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 NOBOXO60393 691 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 RNF8O76064 485 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 GOLGA6DP0CG33 693 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 PNLIPP16233 465 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 ERCC2P18074 760 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 RENBPP51606 427 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 AP1S1P61966 158 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 IL10RBQ08334 325 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 SRSF6Q13247 344 aaKnown RBP13.02□□□□□ -0.33
SF3B3-202ENST00000562722 MAMLD1Q13495 774 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 HLTFQ14527 1009 aaKnown RBP eCLIP13.02□□□□□ -0.33
SF3B3-202ENST00000562722 ZNF235Q14590 738 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 RFTN1Q14699 578 aaPredicted RBP13.02□□□□□ -0.33
SF3B3-202ENST00000562722 KIF26BQ2KJY2 2108 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 ERMARDQ5T6L9 678 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 PPP1R2P3Q6NXS1 205 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 PNCKQ6P2M8 343 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 ARHGAP36Q6ZRI8 547 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 VASH2Q86V25 355 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 ZFAND4Q86XD8 727 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 PIAS4Q8N2W9 510 aaPredicted RBP13.02□□□□□ -0.33
SF3B3-202ENST00000562722 ZSCAN1Q8NBB4 408 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 CCL4L1Q8NHW4 92 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 EXTL1Q92935 676 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 USP7Q93009 1102 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 ECHDC3Q96DC8 303 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 NUS1Q96E22 293 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 KCTD15Q96SI1 283 aaPredicted RBP13.02□□□□□ -0.33
SF3B3-202ENST00000562722 EIF3CQ99613 913 aaKnown RBP13.02□□□□□ -0.33
SF3B3-202ENST00000562722 SNRNP25Q9BV90 132 aaKnown RBP13.02□□□□□ -0.33
SF3B3-202ENST00000562722 LGR4Q9BXB1 951 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 CLMPQ9H6B4 373 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 GOLGA6AQ9NYA3 693 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 TAS2R14Q9NYV8 317 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 B4GALT6Q9UBX8 382 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 SEPT3Q9UH03 358 aa13.02□□□□□ -0.33
SF3B3-202ENST00000562722 SETXQ7Z333 2677 aaKnown RBP13.01□□□□□ -0.33
SF3B3-202ENST00000562722 CFAP46Q8IYW2 2715 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 PRSS38A1L453 326 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 ZW10O43264 779 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 NUDT21O43809 227 aaKnown RBP13.01□□□□□ -0.33
SF3B3-202ENST00000562722 CPP00450 1065 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 HOXC4P09017 264 aaPredicted RBP13.01□□□□□ -0.33
SF3B3-202ENST00000562722 MYCLP1P12525 358 aaPredicted RBP13.01□□□□□ -0.33
SF3B3-202ENST00000562722 NFKBIAP25963 317 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 ALDH4A1P30038 563 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 MAZP56270 477 aaKnown RBP13.01□□□□□ -0.33
SF3B3-202ENST00000562722 KCNC4Q03721 635 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 ZFP36L1Q07352 338 aaKnown RBP13.01□□□□□ -0.33
SF3B3-202ENST00000562722 NSUN2Q08J23 767 aaKnown RBP eCLIP13.01□□□□□ -0.33
SF3B3-202ENST00000562722 ILF3Q12906 894 aaKnown RBP eCLIP13.01□□□□□ -0.33
SF3B3-202ENST00000562722 LBRQ14739 615 aaKnown RBP13.01□□□□□ -0.33
SF3B3-202ENST00000562722 STX1AQ16623 288 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 TMCO4Q5TGY1 634 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 TMEM164Q5U3C3 297 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 AFMIDQ63HM1 303 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 OGFOD3Q6PK18 319 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 ARHGAP12Q8IWW6 846 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 NPWQ8N729 165 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 COL26A1Q96A83 441 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 ERGIC2Q96RQ1 377 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 PEBP4Q96S96 227 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 GSDMCQ9BYG8 508 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 ZMYND15Q9H091 742 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 SEMA6CQ9H3T2 930 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 RDH14Q9HBH5 336 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 PHPT1Q9NRX4 125 aaPredicted RBP13.01□□□□□ -0.33
SF3B3-202ENST00000562722 ANO10Q9NW15 660 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 FOXJ2Q9P0K8 574 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 ACSL6Q9UKU0 697 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 FLNBO75369 2602 aaKnown RBP13.01□□□□□ -0.33
SF3B3-202ENST00000562722 ATMQ13315 3056 aa13.01□□□□□ -0.33
SF3B3-202ENST00000562722 LRP4O75096 1905 aa13□□□□□ -0.33
SF3B3-202ENST00000562722 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13□□□□□ -0.33
SF3B3-202ENST00000562722 TTC24A2A3L6 582 aaPredicted RBP13□□□□□ -0.33
SF3B3-202ENST00000562722 CPNE6O95741 557 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms