RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 GBA3Q9H227 469 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 DPEP2Q9H4A9 486 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 ALG9Q9H6U8 611 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 PKD2L2Q9NZM6 624 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 GMEB2Q9UKD1 530 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 RNF112Q9ULX5 631 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 GOLGA8QA0A0J9YX86 632 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 FAM95CA0A1B0GW59 222 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 GOLGA8OA6NCC3 632 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 SYNDIG1LA6NDD5 238 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 ANTXRLA6NF34 631 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 GOLGA8NF8WBI6 632 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 CCNT2O60583 730 aaKnown RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 PRNPP04156 253 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 CYP17A1P05093 508 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 LAMP2P13473 410 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF7P17097 686 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 PGAM1P18669 254 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 GJA4P35212 333 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 NDST2P52849 883 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 IFT88Q13099 833 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 C1orf61Q13536 156 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 CRYMQ14894 314 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 PDCD2Q16342 344 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 DUSP6Q16828 381 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 UAP1L1Q3KQV9 507 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 PREPLQ4J6C6 727 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 ANKRD20A4Q4UJ75 823 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 C1orf53Q5VUE5 145 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 EGFLAMQ63HQ2 1017 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 PDE12Q6L8Q7 609 aaKnown RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 MTSS1LQ765P7 747 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 TSPAN33Q86UF1 283 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 AHI1Q8N157 1196 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 AFAP1L2Q8N4X5 818 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF398Q8TD17 642 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 HBEGFQ99075 208 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 EBNA1BP2Q99848 306 aaKnown RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 KLF16Q9BXK1 252 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 FUT8Q9BYC5 575 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 FAM124BQ9H5Z6 455 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 LMAN1LQ9HAT1 526 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 RC3H2Q9HBD1 1191 aaKnown RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 SPATA6Q9NWH7 488 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 MTMR10Q9NXD2 777 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 KLHL14Q9P2G3 628 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 RCOR3Q9P2K3 495 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 PPARGC1AQ9UBK2 798 aaKnown RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 B4GALT6Q9UBX8 382 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 ADAM21Q9UKJ8 722 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 PNMA8BQ9ULN7 279 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 ARHGAP26Q9UNA1 814 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 MRPS17Q9Y2R5 130 aaKnown RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 TMEM98Q9Y2Y6 226 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 ACOT9Q9Y305 439 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 FAM186AA6NE01 2351 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 PTPRFP10586 1907 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 BCLAF3A2AJT9 711 aaKnown RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 MID1O15344 667 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 SMIM24O75264 130 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 AP2A1O95782 977 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 CCDC166P0CW27 439 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 IL9P15248 144 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 IL4RP24394 825 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 PIK3CGP48736 1102 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 GALK1P51570 392 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF135P52742 658 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 CDH13P55290 713 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 HTRA4P83105 476 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 PPIDQ08752 370 aaKnown RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 ITGA9Q13797 1035 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 MRPL58Q14197 206 aaKnown RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 CHI3L2Q15782 390 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 RAB41Q5JT25 222 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 GDPD4Q6W3E5 623 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF662Q6ZS27 426 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 PRPF39Q86UA1 669 aaKnown RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 CNTD1Q8N815 330 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 FRMD1Q8N878 549 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 HIPK4Q8NE63 616 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 OR4L1Q8NH43 312 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 KCTD4Q8WVF5 259 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 MTFMTQ96DP5 389 aaKnown RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 COPS8Q99627 209 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 GPR174Q9BXC1 333 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 FRMD8P1Q9BZ68 369 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 OR2AG1Q9H205 316 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 FAM83DQ9H4H8 585 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 KCNK12Q9HB15 430 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 NPHS2Q9NP85 383 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.46□□□□□ -1.54
VPS13C-209ENST00000560637 SIRPGQ9P1W8 387 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 CA5BQ9Y2D0 317 aa5.46□□□□□ -1.54
VPS13C-209ENST00000560637 SEC16AO15027 2179 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 DOCK6Q96HP0 2047 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 GLYATL1P3A0A0U1RQE8 302 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 HMGB1P1B2RPK0 211 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 H3BQF6 201 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 I6L893 689 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 TPP1O14773 563 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms