RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 PTGR2Q8N8N7 351 aaPredicted RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 HMGCLL1Q8TB92 370 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 TBC1D15Q8TC07 691 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 ANKRD49Q8WVL7 239 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 GLT1D1Q96MS3 346 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 GPR22Q99680 433 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 SMARCAD1Q9H4L7 1026 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 MRPL40Q9NQ50 206 aaKnown RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 RBM22Q9NW64 420 aaKnown RBP eCLIP11.37□□□□□ -0.592e-7■■■■□ 25.4
LDLR-208ENST00000558518 MPP6Q9NZW5 540 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 SUCOQ9UBS9 1254 aaKnown RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 TTC36A6NLP5 189 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 IPO13O94829 963 aaKnown RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 CYP4B1P13584 511 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 RCVRNP35243 200 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 ADRA1BP35368 520 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 SEPHS1P49903 392 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 LRP8Q14114 963 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 FRG1Q14331 258 aaKnown RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 ANKRD34AQ69YU3 496 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 ERMP1Q7Z2K6 904 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 PIWIL4Q7Z3Z4 852 aaKnown RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 ATPAF2Q8N5M1 289 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 TNIP2Q8NFZ5 429 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 WNT8BQ93098 351 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 KLHL5Q96PQ7 755 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 OLFM1Q99784 485 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 VPS45Q9NRW7 570 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 SQORQ9Y6N5 450 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 WNK3Q9BYP7 1800 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 LINC00854A0A1B0GVQ3 168 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 SUPT3HB4E1H0 165 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 ARPC2O15144 300 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 HBP1O60381 514 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 LDLRP01130 860 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 HSPA1AP0DMV8 641 aaKnown RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 HSPA1BP0DMV9 641 aaKnown RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 PRKACGP22612 351 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 PTPN9P43378 593 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 RPS9P46781 194 aaKnown RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 AGAP9Q5VTM2 703 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 WSCD1Q658N2 575 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 ERO1BQ86YB8 467 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 FIG4Q92562 907 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 NCLNQ969V3 563 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 C19orf60Q96EN9 201 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 TBL1YQ9BQ87 522 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 C9orf16Q9BUW7 83 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 RNF39Q9H2S5 420 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 KIAA1257Q9ULG3 409 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 PRRC2BQ5JSZ5 2229 aaKnown RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 DPYSL4O14531 572 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 GSTT2P0CG29 244 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 GSTT2BP0CG30 244 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 CYP2B6P20813 491 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 JAK1P23458 1154 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 POLR2IP36954 125 aaKnown RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 RPL26P61254 145 aaKnown RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 NAB1Q13506 487 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 ZNF829Q3KNS6 432 aaPredicted RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 BTBD8Q5XKL5 378 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 RNF19BQ6ZMZ0 732 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 Q8N9G6 341 aaPredicted RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 DQX1Q8TE96 717 aaKnown RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 NRBF2Q96F24 287 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 MRPL57Q9BQC6 102 aaKnown RBP11.36□□□□□ -0.59
LDLR-208ENST00000558518 ANKRD60Q9BZ19 345 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 TRIM15Q9C019 465 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 SMURF2Q9HAU4 748 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 KCTD3Q9Y597 815 aa11.36□□□□□ -0.59
LDLR-208ENST00000558518 UBXN8O00124 270 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 LRIG2O94898 1065 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 PIM1P11309 404 aaPredicted RBP11.35□□□□□ -0.59
LDLR-208ENST00000558518 CAPN3P20807 821 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 HOXD12P35452 270 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 UGP2Q16851 508 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 ARL13BQ3SXY8 428 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 MILR1Q7Z6M3 343 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 CLEC14AQ86T13 490 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 LZTR1Q8N653 840 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 BLOC1S5Q8TDH9 187 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 SH3RF2Q8TEC5 729 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 B3GALT6Q96L58 329 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 ACOX2Q99424 681 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 SPC25Q9HBM1 224 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 SMPD3Q9NY59 655 aaPredicted RBP11.35□□□□□ -0.59
LDLR-208ENST00000558518 BTBD19C9JJ37 291 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 M0R3G1 203 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 MSI1O43347 362 aaKnown RBP11.35□□□□□ -0.59
LDLR-208ENST00000558518 ALDOCP09972 364 aaKnown RBP11.35□□□□□ -0.59
LDLR-208ENST00000558518 KCNC1P48547 511 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 MTPNP58546 118 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 NFATC3Q12968 1075 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 MEP1AQ16819 746 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 CELF3Q5SZQ8 465 aaKnown RBP11.35□□□□□ -0.59
LDLR-208ENST00000558518 ANKRD26P1Q6NSI1 321 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 TBPL2Q6SJ96 375 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 BNIPLQ7Z465 357 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 SLC15A3Q8IY34 581 aa11.35□□□□□ -0.59
LDLR-208ENST00000558518 RDH11Q8TC12 318 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms