RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ANGPT2O15123 496 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 MAFKO60675 156 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 WISP3O95389 354 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-231ENST00000557433 MT-CYBP00156 380 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-231ENST00000557433 EPHX2P34913 555 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 MAGEA8P43361 318 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 MRPL19P49406 292 aaKnown RBP16.32■□□□□ 0.2
SHMT2-231ENST00000557433 PGGT1BP53609 377 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 NAA20P61599 178 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 GRIK2Q13002 908 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 FUNDC1Q8IVP5 155 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 ARHGAP12Q8IWW6 846 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 C12orf43Q96C57 262 aaKnown RBP16.32■□□□□ 0.2
SHMT2-231ENST00000557433 PLEKHG4BQ96PX9 1271 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 OLFM1Q99784 485 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 TRIM54Q9BYV2 358 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 SLC38A7Q9NVC3 462 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-231ENST00000557433 SLC2A6Q9UGQ3 507 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 VWA7Q9Y334 891 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 TTC24A2A3L6 582 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-231ENST00000557433 MBLAC1A4D2B0 266 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-231ENST00000557433 HHLA1C9JL84 531 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 PLOD2O00469 737 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 DLGAP1O14490 977 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 SLC7A4O43246 635 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 ZNF12P17014 697 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 KCNA5P22460 613 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 ADCYAP1R1P41586 468 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 CCT8P50990 548 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 HERVK_113P63132 956 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 ZNF829Q3KNS6 432 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-231ENST00000557433 DUSP28Q4G0W2 176 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 UBXN11Q5T124 520 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 HECTD2Q5U5R9 776 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 BHLHA9Q7RTU4 235 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 RAB44Q7Z6P3 723 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-231ENST00000557433 TRIM74Q86UV6 250 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 TRIM73Q86UV7 250 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 GPC2Q8N158 579 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 TRPV3Q8NET8 790 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 ZMIZ2Q8NF64 920 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 FATE1Q969F0 183 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 RNF34Q969K3 372 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 ERVK-6Q9BXR3 956 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 KATNBL1Q9H079 304 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 CSNK1G1Q9HCP0 422 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 SH3GLB1Q9Y371 365 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 RNF103-CHMP3A0A140T963 221 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 SAC3D1A6NKF1 404 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 NME4O00746 187 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 HDCP19113 662 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 PRAMEP78395 509 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 SNX17Q15036 470 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 KIF19Q2TAC6 998 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 UGT3A2Q3SY77 523 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 AASDHQ4L235 1098 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-231ENST00000557433 RBM20Q5T481 1227 aaKnown RBP16.31■□□□□ 0.2
SHMT2-231ENST00000557433 KIAA0319Q5VV43 1072 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 LAYNQ6UX15 382 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 TAC4Q86UU9 113 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 SLC15A3Q8IY34 581 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 PAPD5Q8NDF8 572 aaKnown RBP16.31■□□□□ 0.2
SHMT2-231ENST00000557433 RSPH1Q8WYR4 309 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 MRGPRX2Q96LB1 330 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 NPLQ9BXD5 320 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-231ENST00000557433 CXorf21Q9HAI6 301 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 GOLGA2P5Q9HBQ8 144 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 TNFRSF12AQ9NP84 129 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 TMEM45AQ9NWC5 275 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 NEU3Q9UQ49 428 aa16.31■□□□□ 0.2
SHMT2-231ENST00000557433 SUPT7LO94864 414 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 IGLV3-25P01717 112 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 CAPGP40121 348 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 SCNN1BP51168 640 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 CDH15P55291 814 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 TMEM62Q0P6H9 643 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 GRSF1Q12849 480 aaKnown RBP eCLIP16.3■□□□□ 0.2
SHMT2-231ENST00000557433 SEPT6Q14141 434 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 UNC50Q53HI1 259 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 CYHR1Q6ZMK1 362 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 GPRIN1Q7Z2K8 1008 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 RETREG3Q86VR2 466 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 EPHX4Q8IUS5 362 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 TBC1D21Q8IYX1 336 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 ADGRG5Q8IZF4 528 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 GRIN3AQ8TCU5 1115 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 HSPBAP1Q96EW2 488 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 PCED1BQ96HM7 432 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 SENP8Q96LD8 212 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 PPP1R10Q96QC0 940 aaKnown RBP16.3■□□□□ 0.2
SHMT2-231ENST00000557433 SLC25A51Q9H1U9 297 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 AKTIPQ9H8T0 292 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 LIN28AQ9H9Z2 209 aaKnown RBP16.3■□□□□ 0.2
SHMT2-231ENST00000557433 POPDC3Q9HBV1 291 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 ATP13A1Q9HD20 1204 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 RBM22Q9NW64 420 aaKnown RBP eCLIP16.3■□□□□ 0.28e-10■■■■■ 40.7
SHMT2-231ENST00000557433 PKD2L2Q9NZM6 624 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 MAP10Q9P2G4 905 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 AURKCQ9UQB9 309 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms