RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 LGI2Q8N0V4 545 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 CFAP52Q8N1V2 620 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 PYROXD2Q8N2H3 581 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 RAPGEF5Q92565 580 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 TBC1D31Q96DN5 1066 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 LIN37Q96GY3 246 aaPredicted RBP12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 CAPZA3Q96KX2 299 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 BMFQ96LC9 184 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 RPRD1AQ96P16 312 aaPredicted RBP12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 NAP1L3Q99457 506 aaPredicted RBP12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 ZNF670Q9BS34 389 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 CATSPERBQ9H7T0 1116 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 PREBQ9HCU5 417 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 FZD3Q9NPG1 666 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 EVA1BQ9NVM1 165 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 NCKIPSDQ9NZQ3 722 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 RCOR3Q9P2K3 495 aaPredicted RBP12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 XPO7Q9UIA9 1087 aaKnown RBP12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 VANGL2Q9ULK5 521 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 SNX10Q9Y5X0 201 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 OTOGQ6ZRI0 2925 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 BLACEA4D250 179 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 NTN3O00634 580 aaPredicted RBP12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 RIOK3O14730 519 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 APOL1O14791 398 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 PLD2O14939 933 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 LRIG2O94898 1065 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 LUC7L3O95232 432 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 CSF2P04141 144 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 PYGMP11217 842 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 NME1P15531 152 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 HTR7P34969 479 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 UGT1A5P35504 534 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 CCR10P46092 362 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 AUHQ13825 339 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 TUBB2AQ13885 445 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 TFDP2Q14188 446 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 DPYSL3Q14195 570 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 LLGL1Q15334 1064 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 PPP2R5EQ16537 467 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 LONRF2Q1L5Z9 754 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 NEK5Q6P3R8 708 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 MFSD7Q6UXD7 560 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 Q6ZSR6 202 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 CYP4V2Q6ZWL3 525 aaPredicted RBP12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 B3GNT8Q7Z7M8 397 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 PTRH1Q86Y79 214 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 FAM26EQ8N5C1 309 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 MAIP1Q8WWC4 291 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 C1orf74Q96LT6 269 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 TUBB2BQ9BVA1 445 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 BOCQ9BWV1 1114 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 OSBPL8Q9BZF1 889 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 ANLNQ9NQW6 1124 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 DNAJC28Q9NX36 388 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 DONSONQ9NYP3 566 aa12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 ZFR2Q9UPR6 939 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 RP1L1Q8IWN7 2480 aaPredicted RBP12.62□□□□□ -0.39
CLSTN3-208ENST00000538933 GOLGA6L10A0A0M3HER8 536 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 ENO4A6NNW6 628 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 PGRMC1O00264 195 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 CES2O00748 559 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 TPP1O14773 563 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 MCF2LO15068 1137 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 FGF10O15520 208 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 TJP3O95049 919 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 FGGP02679 453 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 CD48P09326 243 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 LIPCP11150 499 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 ZFXP17010 805 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 HNRNPA2B1P22626 353 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 VASPP50552 380 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 DYNLT1P63172 113 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 CKAP4Q07065 602 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 MMRN1Q13201 1228 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 CDH18Q13634 790 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 ANKRD20A8PQ5CZ79 823 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 FAM46CQ5VWP2 391 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 RFX8Q6ZV50 586 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 HORMAD1Q86X24 394 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 DCP2Q8IU60 420 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 HEMGNQ9BXL5 484 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 MAGEB5Q9BZ81 275 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 CWC15Q9P013 229 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 RNF14Q9UBS8 474 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 POLQO75417 2590 aa12.61□□□□□ -0.39
CLSTN3-208ENST00000538933 CSMD1Q96PZ7 3565 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 hCG_1818297A0A087WSY0 165 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 SPTY2D1-AS1A0A0U1RR47 76 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 POM121BA6NF01 834 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 FAM72CH0Y354 149 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 RNF103O00237 685 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 ZNF185O15231 689 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 NVLO15381 856 aaKnown RBP12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 ATP9BO43861 1147 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 CST8O60676 142 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 AMPD1P23109 780 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 AKT2P31751 481 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 SERPINB6P35237 376 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 CASRP41180 1078 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms