RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 CCNB1P14635 433 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 TSHRP16473 764 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 CES1P23141 567 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 HK3P52790 923 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 DAB2P98082 770 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 DSC2Q02487 901 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 PPARDQ03181 441 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 ITKQ08881 620 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 NIPAL4Q0D2K0 466 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 MTM1Q13496 603 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 GSE1Q14687 1217 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 ALG11Q2TAA5 492 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 DEFB133Q30KQ1 61 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 PRRT3Q5FWE3 981 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 LRRC38Q5VT99 294 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 ALG1LQ6GMV1 187 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 MACC1Q6ZN28 852 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 TECPR1Q7Z6L1 1165 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 PROSER1Q86XN7 944 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 PHACTR4Q8IZ21 702 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 PLD5Q8N7P1 536 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 CNTD1Q8N815 330 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 PDCD6IPQ8WUM4 868 aaKnown RBP9.37□□□□□ -0.91
HDAC3-215ENST00000519474 ZCCHC14Q8WYQ9 949 aaKnown RBP9.37□□□□□ -0.91
HDAC3-215ENST00000519474 RNF25Q96BH1 459 aaPredicted RBP9.37□□□□□ -0.91
HDAC3-215ENST00000519474 TBATAQ96M53 351 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 FAM210AQ96ND0 272 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 LGR4Q9BXB1 951 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 CCDC86Q9H6F5 360 aaKnown RBP9.37□□□□□ -0.91
HDAC3-215ENST00000519474 SPASTQ9UBP0 616 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 TFR2Q9UP52 801 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 RAI2Q9Y5P3 530 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 ALG6Q9Y672 507 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 ACACBO00763 2458 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 EME2A4GXA9 379 aaPredicted RBP9.36□□□□□ -0.91
HDAC3-215ENST00000519474 TMEM202A6NGA9 273 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 ZNF487B1APH4 448 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 LMO7DNF2Z398 122 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 OPA1O60313 960 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 HEXIM1O94992 359 aaKnown RBP9.36□□□□□ -0.91
HDAC3-215ENST00000519474 TNFP01375 233 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 JCHAINP01591 159 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 PCCBP05166 539 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 CELA2BP08218 269 aaPredicted RBP9.36□□□□□ -0.91
HDAC3-215ENST00000519474 ELFN1P0C7U0 828 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 ALPPL2P10696 532 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 CTPS1P17812 591 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 COMTP21964 271 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 LHCGRP22888 699 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 VIPR1P32241 457 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 HNF1BP35680 557 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 SLC1A1P43005 524 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 BLKP51451 505 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 DUSP3P51452 185 aaPredicted RBP9.36□□□□□ -0.91
HDAC3-215ENST00000519474 ZNF75DP51815 510 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 HADHBP55084 474 aaKnown RBP9.36□□□□□ -0.91
HDAC3-215ENST00000519474 SRP54P61011 504 aaKnown RBP9.36□□□□□ -0.91
HDAC3-215ENST00000519474 PTSQ03393 145 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 NFATC4Q14934 902 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 ACOX1Q15067 660 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 CNGA3Q16281 694 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 HS1BP3Q53T59 392 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 ZFYVE27Q5T4F4 411 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 ARMC12Q5T9G4 340 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 HES3Q5TGS1 186 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 CDCP2Q5VXM1 449 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 SLC9A4Q6AI14 798 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 TIGD7Q6NT04 549 aaPredicted RBP9.36□□□□□ -0.91
HDAC3-215ENST00000519474 ZCCHC8Q6NZY4 707 aaKnown RBP9.36□□□□□ -0.91
HDAC3-215ENST00000519474 OGFOD3Q6PK18 319 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 CRTC1Q6UUV9 634 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 MFSD7Q6UXD7 560 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 NPNTQ6UXI9 565 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 RFLNAQ6ZTI6 216 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 Q6ZVL8 140 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 B4GALNT4Q76KP1 1039 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 RD3Q7Z3Z2 195 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 HSD11B1LQ7Z5J1 315 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 TSPAN33Q86UF1 283 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 HID1Q8IV36 788 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 CCDC13Q8IYE1 715 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 CCDC170Q8IYT3 715 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.36□□□□□ -0.91
HDAC3-215ENST00000519474 PAF1Q8N7H5 531 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 CCNYQ8ND76 341 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 TPCN2Q8NHX9 752 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 HDAC11Q96DB2 347 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 MCCC1Q96RQ3 725 aaPredicted RBP9.36□□□□□ -0.91
HDAC3-215ENST00000519474 LGMNQ99538 433 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 IL12RB2Q99665 862 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 LRRC61Q9BV99 259 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 BOCQ9BWV1 1114 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 MAK16Q9BXY0 300 aaKnown RBP9.36□□□□□ -0.91
HDAC3-215ENST00000519474 SLC13A1Q9BZW2 595 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 DKK4Q9UBT3 224 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 APOBEC3BQ9UH17 382 aaKnown RBP9.36□□□□□ -0.91
HDAC3-215ENST00000519474 AMACRQ9UHK6 382 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 CHKBQ9Y259 395 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 PCDHA13Q9Y5I0 950 aa9.36□□□□□ -0.91
HDAC3-215ENST00000519474 EPN1Q9Y6I3 576 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms