RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	CACNA2D2	Q9NY47	1150 aa		11.25	□□□□□ -0.61
APTX-223	ENST00000479656	TXNDC16	Q9P2K2	825 aa		11.25	□□□□□ -0.61
APTX-223	ENST00000479656	THAP10	Q9P2Z0	257 aa	Predicted RBP	11.25	□□□□□ -0.61
APTX-223	ENST00000479656	PHTF1	Q9UMS5	762 aa		11.25	□□□□□ -0.61
APTX-223	ENST00000479656	BRWD1	Q9NSI6	2320 aa		11.25	□□□□□ -0.61
APTX-223	ENST00000479656	EDDM13	A0A1B0GTR0	161 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	OR51F1	A6NGY5	319 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656		K7EQS6	105 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	CTH	P32929	405 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	WAS	P42768	502 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	PRAME	P78395	509 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	ACVR1	Q04771	509 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	CTBP1	Q13363	440 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	NAB1	Q13506	487 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	BMPR2	Q13873	1038 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	POM121L1P	Q3SYA9	428 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	LEXM	Q3ZCV2	418 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	IER5L	Q5T953	404 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	MROH9	Q5TGP6	573 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	PTCRA	Q6ISU1	281 aa	Predicted RBP	11.24	□□□□□ -0.61
APTX-223	ENST00000479656	NEPRO	Q6NW34	567 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	LYSMD3	Q7Z3D4	306 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	TRABD2A	Q86V40	505 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	DENND6A	Q8IWF6	608 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	TTC30B	Q8N4P2	665 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	PNPLA1	Q8N8W4	532 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	FAM76A	Q8TAV0	307 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	MZB1	Q8WU39	189 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	EZH1	Q92800	747 aa	Predicted RBP	11.24	□□□□□ -0.61
APTX-223	ENST00000479656	PEX13	Q92968	403 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	EID2B	Q96D98	161 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	SCRN2	Q96FV2	425 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	CPNE1	Q99829	537 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	TRPV5	Q9NQA5	729 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	NLE1	Q9NVX2	485 aa	Predicted RBP	11.24	□□□□□ -0.61
APTX-223	ENST00000479656	HACD3	Q9P035	362 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	GGT7	Q9UJ14	662 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	STARD13	Q9Y3M8	1113 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	ZNF711	Q9Y462	761 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	KIAA1549L	Q6ZVL6	1849 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	TICRR	Q7Z2Z1	1910 aa		11.24	□□□□□ -0.61
APTX-223	ENST00000479656	HMX2	A2RU54	273 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	CCDC162P	A2VCL2	907 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	TRIM49D1	C9J1S8	452 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	SLC7A4	O43246	635 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	NARS	O43776	548 aa	Known RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	RPP40	O75818	363 aa	Known RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	KRT37	O76014	449 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	CLDN7	O95471	211 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	GOT2	P00505	430 aa	Known RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	EPHX1	P07099	455 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	SNRPA	P09012	282 aa	Known RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	NR1D1	P20393	614 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	GP5	P40197	560 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	TNFRSF4	P43489	277 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	ATP1A2	P50993	1020 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	ZNF140	P52738	457 aa	Predicted RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	SEC13	P55735	322 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	POLR2L	P62875	67 aa	Known RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	CDKN3	Q16667	212 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	LRRC73	Q5JTD7	316 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	HABP4	Q5JVS0	413 aa	Known RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	GRTP1	Q5TC63	336 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	LGSN	Q5TDP6	509 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	NDUFAF2	Q8N183	169 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	LRIG1	Q96JA1	1093 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	FAM129B	Q96TA1	746 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	KLF6	Q99612	283 aa	Predicted RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	TRABD	Q9H4I3	376 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	ZFYVE1	Q9HBF4	777 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	SUN2	Q9UH99	717 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	SARDH	Q9UL12	918 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	RIMKLB	Q9ULI2	386 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	PPIL1	Q9Y3C6	166 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	STON1	Q9Y6Q2	735 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	PIAS3	Q9Y6X2	628 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	C1orf232	A0A0U1RR37	186 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656		A0A1W2PQ67	120 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	CAPN8	A6NHC0	703 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	NPIPB15	A6NHN6	443 aa	Predicted RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	STX7	O15400	261 aa	Known RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	KRT38	O76015	456 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	AHSG	P02765	367 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	MT-ND3	P03897	115 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	HNRNPL	P14866	589 aa	Known RBP eCLIP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	IL9	P15248	144 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	TIMP2	P16035	220 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	TIE1	P35590	1138 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	ABCG1	P45844	678 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	SERPINB9	P50453	376 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	PPP2R2A	P63151	447 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	PDE1B	Q01064	536 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	TFF2	Q03403	129 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	PON2	Q15165	354 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	UGP2	Q16851	508 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	ZNF805	Q5CZA5	627 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	CRTC1	Q6UUV9	634 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	TAOK1	Q7L7X3	1001 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	LDB1	Q86U70	411 aa	Predicted RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	TSPAN33	Q86UF1	283 aa		11.23	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms