RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 KLQ9UEF7 1012 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CNOT8Q9UFF9 292 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ACSL6Q9UKU0 697 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 GPR34Q9UPC5 381 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PPIL1Q9Y3C6 166 aa12.3□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ZFC3H1O60293 1989 aaKnown RBP12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ASH1LQ9NR48 2969 aaKnown RBP12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 D6RAR5 112 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 K7ENP7 123 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 DFFAO00273 331 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 KLK10O43240 276 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 EFSO43281 561 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 MAFKO60675 156 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 MBD3O95983 291 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PCCBP05166 539 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ITGA2BP08514 1039 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TCF4P15884 667 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 RBMS1P29558 406 aaKnown RBP12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CCKBRP32239 447 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SCNN1BP51168 640 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 RENBPP51606 427 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CCL7P80098 99 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 RHDQ02161 417 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 VAC14Q08AM6 782 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SPIDRQ14159 915 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 LBRQ14739 615 aaKnown RBP12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 IQCB1Q15051 598 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 BOLA3Q53S33 107 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PPP6R3Q5H9R7 873 aaPredicted RBP12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 FIGNQ5HY92 759 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TMCO4Q5TGY1 634 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PNCKQ6P2M8 343 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 INO80CQ6PI98 192 aaPredicted RBP12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SFTPA2Q8IWL1 248 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ATL2Q8NHH9 583 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CINPQ9BW66 212 aaPredicted RBP12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 LRRN3Q9H3W5 708 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SP110Q9HB58 689 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 MRPL40Q9NQ50 206 aaKnown RBP12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 GULP1Q9UBP9 304 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SEPT3Q9UH03 358 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PCDHGA7Q9Y5G6 932 aa12.29□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TENM4Q6N022 2769 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TTC24A2A3L6 582 aaPredicted RBP12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SMTNL1A8MU46 457 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 DAPK3O43293 454 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SOCS5O75159 536 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TNFSF15O95150 251 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ELFN1P0C7U0 828 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 MYBL1P10243 752 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SKILP12757 684 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 GLB1P16278 677 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 AMPD1P23109 780 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 IL4RP24394 825 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PBX1P40424 430 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CLN3Q13286 438 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 EIF3IQ13347 325 aaKnown RBP12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 HLTFQ14527 1009 aaKnown RBP eCLIP12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ASIC2Q16515 512 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CERCAMQ5T4B2 595 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ARHGAP40Q5TG30 622 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 BROXQ5VW32 411 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TXNRD3NBQ6F5E7 133 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 RD3Q7Z3Z2 195 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 NRROSQ86YC3 692 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ARL14Q8N4G2 192 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 NIPA2Q8N8Q9 360 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 FAM71BQ8TC56 605 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 GPBAR1Q8TDU6 330 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CCDC97Q96F63 343 aaPredicted RBP12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 GFM1Q96RP9 751 aaKnown RBP12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 NUDCD1Q96RS6 583 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 MGME1Q9BQP7 344 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 FUCA2Q9BTY2 467 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TEX101Q9BY14 249 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 NAT10Q9H0A0 1025 aaKnown RBP12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TMEM168Q9H0V1 697 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SIRPGQ9P1W8 387 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 B4GALT6Q9UBX8 382 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 DOLKQ9UPQ8 538 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ST14Q9Y5Y6 855 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SCINQ9Y6U3 715 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 BSNQ9UPA5 3926 aa12.28□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 BOD1L1Q8NFC6 3051 aa12.27□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQ67 120 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TMX2-CTNND1H3BSU7 103 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CACNB4O00305 520 aaPredicted RBP12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PLD2O14939 933 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 NUDT21O43809 227 aaKnown RBP12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 HEXIM1O94992 359 aaKnown RBP12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 RARAP10276 462 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TEAD1P28347 426 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 UGT1A5P35504 534 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 HSPA9P38646 679 aaKnown RBP12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 B4GALNT1Q00973 533 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SLC25A11Q02978 314 aaKnown RBP12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CFHR1Q03591 330 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 KLHL30Q0D2K2 578 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 IHHQ14623 411 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms