RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 ERGIC2Q96RQ1 377 aa13.28□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 TPP2P29144 1249 aaPredicted RBP13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 FAAP100Q0VG06 881 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 PTPRNQ16849 979 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 SLC9A4Q6AI14 798 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 NEPROQ6NW34 567 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 RTL4Q6ZR62 310 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 SNX20Q7Z614 316 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 CLHC1Q8NHS4 586 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 PURBQ96QR8 312 aaKnown RBP13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 AIFM2Q9BRQ8 373 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 PRDM16Q9HAZ2 1276 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 TRHDEQ9UKU6 1024 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 SERPINE1P05121 402 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 NAGLUP54802 743 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 ANTXR2P58335 489 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 SMAD3P84022 425 aaKnown RBP13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 CBX2Q14781 532 aaPredicted RBP13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 ARSHQ5FYA8 562 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 NOMO2Q5JPE7 1267 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 UBR7Q8N806 425 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 C12orf29Q8N999 325 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 STARD8Q92502 1023 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 FTH1P02794 183 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 RXRGP48443 463 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 SLC6A3Q01959 620 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 MTA1Q13330 715 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 UAP1L1Q3KQV9 507 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 NEK5Q6P3R8 708 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 ATG14Q6ZNE5 492 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 DGLUCYQ7Z3D6 616 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 ANKS1BQ7Z6G8 1248 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 MCOLN2Q8IZK6 566 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 SYN2Q92777 582 aaPredicted RBP13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 HIST1H2AAQ96QV6 131 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 TPK1Q9H3S4 243 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 GGA2Q9UJY4 613 aa13.27□□□□□ -0.28
NPHP3-ACAD11-201ENST00000471702 KERAO60938 352 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 IFNA6P05013 189 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 OR1D2P34982 312 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 TAPT1Q6NXT6 567 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ARHGEF19Q8IW93 802 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 TRMT2AQ8IZ69 625 aaKnown RBP13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ZNF615Q8N8J6 731 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 MYCBPAPQ8TBZ2 947 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ARNTL2Q8WYA1 636 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 UBE2E3Q969T4 207 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 MARCH7Q9H992 704 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 PLEKHA1Q9HB21 404 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 PCDH9Q9HC56 1237 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SLC31A1O15431 190 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SASH3O75995 380 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CFIP05156 583 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 GNALP38405 381 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SSR2P43308 183 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 KCNJ5P48544 419 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 FAM46CQ5VWP2 391 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SLC9A9Q8IVB4 645 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 STAG3L4Q8TBR4 150 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 KLK6Q92876 244 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 RRN3Q9NYV6 651 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ERVK-11Q9UQG0 969 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 PRRC2BQ5JSZ5 2229 aaKnown RBP13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 VIPP01282 170 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CAPZA1P52907 286 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 PURAQ00577 322 aaKnown RBP13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 VGLL4Q14135 290 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SEMA3AQ14563 771 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 OCLNQ16625 522 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CADM2Q8N3J6 435 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 RNF121Q9H920 327 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ERGIC3Q9Y282 383 aa13.27□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ADH1CP00326 375 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 TNFRSF8P28908 595 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 FNBP1LQ5T0N5 605 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CERCAMQ5T4B2 595 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SPATA5L1Q9BVQ7 753 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 VPS4AQ9UN37 437 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 UMODL1Q5DID0 1318 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ME2P23368 584 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 MZT2AQ6P582 158 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 LZTR1Q8N653 840 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ZNF540Q8NDQ6 660 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 C9orf16Q9BUW7 83 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ZDHHC9Q9Y397 364 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 GMPPBQ9Y5P6 360 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 F8VP50 259 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 INMTO95050 263 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 NPR3P17342 541 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CHN2P52757 468 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 UGT2B15P54855 530 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SLC12A3P55017 1021 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 NAXEQ8NCW5 288 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 TBC1D24Q9ULP9 559 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 IRAK3Q9Y616 596 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CEP170Q5SW79 1584 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 A0A087X1B8 175 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 AXIN1O15169 862 aa13.26□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 PGDP52209 483 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms