RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 EXD1Q8NHP7 514 aa18.74■□□□□ 0.59
USP39-209ENST00000458268 NUS1Q96E22 293 aa18.74■□□□□ 0.59
USP39-209ENST00000458268 RBM15Q96T37 977 aaKnown RBP eCLIP18.74■□□□□ 0.59
USP39-209ENST00000458268 TCEAL2Q9H3H9 227 aaPredicted RBP18.74■□□□□ 0.59
USP39-209ENST00000458268 APOBEC3BQ9UH17 382 aaKnown RBP18.74■□□□□ 0.59
USP39-209ENST00000458268 KLK13Q9UKR3 277 aa18.74■□□□□ 0.59
USP39-209ENST00000458268 PACSIN2Q9UNF0 486 aaPredicted RBP18.74■□□□□ 0.59
USP39-209ENST00000458268 GRID2IPA4D2P6 1211 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 PJA2O43164 708 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 FTCDO95954 541 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 SLC4A1P02730 911 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 TGM2P21980 687 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 CTNNA2P26232 953 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 CTNNA1P35221 906 aaKnown RBP18.73■□□□□ 0.59
USP39-209ENST00000458268 IFI35P80217 286 aaPredicted RBP18.73■□□□□ 0.59
USP39-209ENST00000458268 EIF2B5Q13144 721 aaKnown RBP18.73■□□□□ 0.59
USP39-209ENST00000458268 AADACL2Q6P093 401 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 PEX26Q7Z412 305 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 HID1Q8IV36 788 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 PHACTR4Q8IZ21 702 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 SLC25A45Q8N413 288 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 ARRDC2Q8TBH0 407 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 TFB1MQ8WVM0 346 aaKnown RBP18.73■□□□□ 0.59
USP39-209ENST00000458268 TSACCQ96A04 125 aaPredicted RBP18.73■□□□□ 0.59
USP39-209ENST00000458268 OLFM3Q96PB7 478 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 FAM118BQ9BPY3 351 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 APOOQ9BUR5 198 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 TDRD1Q9BXT4 1180 aaKnown RBP18.73■□□□□ 0.59
USP39-209ENST00000458268 PCDH9Q9HC56 1237 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 CD84Q9UIB8 345 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 AMFRQ9UKV5 643 aa18.73■□□□□ 0.59
USP39-209ENST00000458268 H7C0C1 242 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 TRIM38O00635 465 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 SIGLEC6O43699 453 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 HEXIM1O94992 359 aaKnown RBP18.72■□□□□ 0.59
USP39-209ENST00000458268 CSF2P04141 144 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 ALPPL2P10696 532 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 MYF5P13349 255 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 NME1P15531 152 aaKnown RBP18.72■□□□□ 0.59
USP39-209ENST00000458268 LHCGRP22888 699 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 CES1P23141 567 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 HTR1BP28222 390 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 HNF1BP35680 557 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 ETV3P41162 512 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 CETN2P41208 172 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 ATP5OP48047 213 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 RWDD2BP57060 319 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 YPEL5P62699 121 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 ZNF211Q13398 564 aaPredicted RBP18.72■□□□□ 0.59
USP39-209ENST00000458268 GALNT3Q14435 633 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 IHHQ14623 411 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 MACC1Q6ZN28 852 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 NYAP1Q6ZVC0 841 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 BZW1Q7L1Q6 419 aaKnown RBP18.72■□□□□ 0.59
USP39-209ENST00000458268 HSD11B1LQ7Z5J1 315 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 CNTD1Q8N815 330 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 ZNF548Q8NEK5 533 aaPredicted RBP18.72■□□□□ 0.59
USP39-209ENST00000458268 PIH1D2Q8WWB5 315 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 CNTNAP3BQ96NU0 1288 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 IL12RB2Q99665 862 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 CNTNAP3Q9BZ76 1288 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 SLC13A1Q9BZW2 595 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 UBP1Q9NZI7 540 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 KLHL8Q9P2G9 620 aaPredicted RBP18.72■□□□□ 0.59
USP39-209ENST00000458268 AMACRQ9UHK6 382 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 KLF15Q9UIH9 416 aa18.72■□□□□ 0.59
USP39-209ENST00000458268 CCDC66A2RUB6 948 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 BTNL10A8MVZ5 291 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 CACNB4O00305 520 aaPredicted RBP18.71■□□□□ 0.59
USP39-209ENST00000458268 TRIM16O95361 564 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 NR2C2P49116 596 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 CLDN6P56747 220 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 SKOR1P84550 965 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 PPARDQ03181 441 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 MTM1Q13496 603 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 DEFB133Q30KQ1 61 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 PRRT3Q5FWE3 981 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 LRRC66Q68CR7 880 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 RAET1GQ6H3X3 334 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 DHRS13Q6UX07 377 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 KANSL1Q7Z3B3 1105 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 FATE1Q969F0 183 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 SCRN2Q96FV2 425 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 CALR3Q96L12 384 aaKnown RBP18.71■□□□□ 0.59
USP39-209ENST00000458268 C10orf88Q9H8K7 445 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 GPR27Q9NS67 375 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 KLQ9UEF7 1012 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 GUCA1BQ9UMX6 200 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 DOLKQ9UPQ8 538 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 PCDHA3Q9Y5H8 950 aa18.71■□□□□ 0.59
USP39-209ENST00000458268 COL5A1P20908 1838 aaPredicted RBP18.71■□□□□ 0.59
USP39-209ENST00000458268 A0A0J9YYE9 177 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 NEMP2A6NFY4 417 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 K7ESM1 405 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 AQP9O43315 295 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 PMPCBO75439 489 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 TRBC1P01850 177 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 PIRTP0C851 137 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 CTSEP14091 401 aa18.7■□□□□ 0.58
USP39-209ENST00000458268 GM2AP17900 193 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms