RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 PBXIP1Q96AQ6 731 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 MCCC1Q96RQ3 725 aaPredicted RBP18.12■□□□□ 0.49
SDC1-203ENST00000403076 RANBP9Q96S59 729 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 NAT9Q9BTE0 207 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 IER2Q9BTL4 223 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 ZFYVE1Q9HBF4 777 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 CHRAC1Q9NRG0 131 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 SOX13Q9UN79 622 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 TEX264Q9Y6I9 313 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 A0A0U1RQS6 177 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 CCDC151A5D8V7 595 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 NPIPB15A6NHN6 443 aaPredicted RBP18.11■□□□□ 0.49
SDC1-203ENST00000403076 BUD23O43709 281 aaKnown RBP18.11■□□□□ 0.49
SDC1-203ENST00000403076 CLDN7O95471 211 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 PGAM1P18669 254 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 AOC1P19801 751 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 CXCL12P48061 93 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 MSLNQ13421 630 aaPredicted RBP18.11■□□□□ 0.49
SDC1-203ENST00000403076 CRTC1Q6UUV9 634 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 CAPN12Q6ZSI9 719 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 LYSMD3Q7Z3D4 306 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 TMC3Q7Z5M5 1100 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 TSPAN33Q86UF1 283 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 CCNJLQ8IV13 435 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 PTCD2Q8WV60 388 aaKnown RBP18.11■□□□□ 0.49
SDC1-203ENST00000403076 KCTD3Q9Y597 815 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 ARL5AQ9Y689 179 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.11■□□□□ 0.49
SDC1-203ENST00000403076 RPS6KL1Q9Y6S9 549 aa18.11■□□□□ 0.49
SDC1-203ENST00000403076 AURKAO14965 403 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 STX7O15400 261 aaKnown RBP18.1■□□□□ 0.49
SDC1-203ENST00000403076 APBB3O95704 486 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 POLBP06746 335 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 LPOP22079 712 aaPredicted RBP18.1■□□□□ 0.49
SDC1-203ENST00000403076 PMS2P54278 862 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 PDE1BQ01064 536 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 CBLBQ13191 982 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 KYNUQ16719 465 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 PIP5KL1Q5T9C9 394 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 CES3Q6UWW8 571 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 DPPA4Q7L190 304 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 NLRP9Q7RTR0 991 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 FAM124AQ86V42 546 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 KBTBD6Q86V97 674 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 ZNF669Q96BR6 464 aaPredicted RBP18.1■□□□□ 0.49
SDC1-203ENST00000403076 LYSMD1Q96S90 227 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 KIFC1Q9BW19 673 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 CDC42EP4Q9H3Q1 356 aaKnown RBP18.1■□□□□ 0.49
SDC1-203ENST00000403076 VPS37BQ9H9H4 285 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 SPATA6Q9NWH7 488 aaPredicted RBP18.1■□□□□ 0.49
SDC1-203ENST00000403076 SERGEFQ9UGK8 458 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 ITM2BQ9Y287 266 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 PKP3Q9Y446 797 aa18.1■□□□□ 0.49
SDC1-203ENST00000403076 FAM237BA0A1B0GVD1 139 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 LDB2O43679 373 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 PCDH8O95206 1070 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 MMP12P39900 470 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 CCR3P51677 355 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 CLCN5P51795 746 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 SKIDA1Q1XH10 827 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 TSTD2Q5T7W7 516 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 AGBL4Q5VU57 503 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 LRRC66Q68CR7 880 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 USP30Q70CQ3 517 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 TTC30BQ8N4P2 665 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 OR14C36Q8NHC7 312 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 CAVIN3Q969G5 261 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 TTC25Q96NG3 672 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 WRAP53Q9BUR4 548 aaKnown RBP18.09■□□□□ 0.49
SDC1-203ENST00000403076 SEMA4AQ9H3S1 761 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 MRM3Q9HC36 420 aaKnown RBP18.09■□□□□ 0.49
SDC1-203ENST00000403076 BPIFA1Q9NP55 256 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 NINJ2Q9NZG7 142 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 GGT7Q9UJ14 662 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 TECTAO75443 2155 aa18.09■□□□□ 0.49
SDC1-203ENST00000403076 AREL1O15033 823 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 TTC4O95801 387 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 ZNF30P17039 623 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 NMBRP28336 390 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 TPMTP51580 245 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 TMPRSS15P98073 1019 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 ANKRD20A4Q4UJ75 823 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 ARMC3Q5W041 872 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 UNC5AQ6ZN44 842 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 TRMT10CQ7L0Y3 403 aaKnown RBP18.08■□□□□ 0.49
SDC1-203ENST00000403076 RELL1Q8IUW5 271 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 CAMKK1Q8N5S9 505 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 CXorf40AQ8TE69 158 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 STYXQ8WUJ0 223 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 UBLCP1Q8WVY7 318 aaPredicted RBP18.08■□□□□ 0.49
SDC1-203ENST00000403076 ZNF778Q96MU6 729 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 WDR83Q9BRX9 315 aaKnown RBP18.08■□□□□ 0.49
SDC1-203ENST00000403076 TRIM56Q9BRZ2 755 aaKnown RBP18.08■□□□□ 0.49
SDC1-203ENST00000403076 DLGAP2Q9P1A6 1054 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 FZD4Q9ULV1 537 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 FADS3Q9Y5Q0 445 aa18.08■□□□□ 0.49
SDC1-203ENST00000403076 PRR23AA6NEV1 266 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 MROH6A6NGR9 719 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 GOLGA8CPA6NN73 597 aa18.08■□□□□ 0.48
SDC1-203ENST00000403076 SLC7A4O43246 635 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms