RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 FBXO4Q9UKT5 387 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 TRPC5Q9UL62 973 aaPredicted RBP-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 GPR45Q9Y5Y3 372 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 PIEZO2Q9H5I5 2752 aa-0.66□□□□□ -2.52
RNU6-540P-201ENST00000384622 TLN2Q9Y4G6 2542 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 PALLDQ8WX93 1383 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 PTPRZ1P23471 2315 aaPredicted RBP-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 IGLV3-16A0A075B6K0 115 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 LOC101059948A0A1B0GTJ6 334 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 SH2D7A6NKC9 451 aaPredicted RBP-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 HTRA2O43464 458 aaPredicted RBP-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 WDR1O75083 606 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 ULK1O75385 1050 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 CLPTM1O96005 669 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 RAF1P04049 648 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 RFC1P35251 1148 aaPredicted RBP-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 STAT1P42224 750 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 RGRP47804 291 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZNF136P52737 540 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 SLC16A1P53985 500 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 SP3Q02447 781 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 STK3Q13188 491 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 KLF1Q13351 362 aaPredicted RBP-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 STAT4Q14765 748 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 KRTAP21-3Q3LHN1 58 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 TTC31Q49AM3 519 aaPredicted RBP-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZNF691Q5VV52 312 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 XRRA1Q6P2D8 792 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 IL27RAQ6UWB1 636 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 ABHD12Q8N2K0 398 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 Q8NBF4 154 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 RNF138Q8WVD3 245 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 NSMCE3Q96MG7 304 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZNF577Q9BSK1 485 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 TGIF2Q9GZN2 237 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 LHPPQ9H008 270 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 CCSER2Q9H7U1 834 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 IPPQ9Y573 584 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 BRWD3Q6RI45 1802 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 C2CD3Q4AC94 2353 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 HCFC1P51610 2035 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 SHANK1Q9Y566 2161 aa-0.67□□□□□ -2.52
RNU6-540P-201ENST00000384622 COL11A1P12107 1806 aaPredicted RBP-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 TRIM49BA6NDI0 452 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 CCDC154A6NI56 674 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 KCNJ18B7U540 433 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 THP07101 528 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 FGRP09769 529 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 KRT3P12035 628 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZNF823P16415 610 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 MST1P26927 711 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 RBL1P28749 1068 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 GPR3P46089 330 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 COPAP53621 1224 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 EPHB1P54762 984 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 SLC37A1P57057 533 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 B3GALT5-AS1P59052 145 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 RBM3P98179 157 aaKnown RBP-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZNF33BQ06732 778 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 ASPHQ12797 758 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 DRP2Q13474 957 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 FASTKD3Q14CZ7 662 aaKnown RBP-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 PCBP1Q15365 356 aaKnown RBP eCLIP-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 PUM3Q15397 648 aaKnown RBP-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 LY6EQ16553 131 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 INSCQ1MX18 579 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 GTDC1Q4AE62 458 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 KCNT1Q5JUK3 1230 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 AGBL2Q5U5Z8 902 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 LRRC31Q6UY01 552 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 CCDC129Q6ZRS4 1044 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 MFSD6Q6ZSS7 791 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 LINC00336Q6ZUF6 198 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 HEATR3Q7Z4Q2 680 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 KLBQ86Z14 1044 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 TMEM61Q8N0U2 210 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 RBFAQ8N0V3 343 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 KCNG4Q8TDN1 519 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 PIP5K1AQ99755 562 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 JPH2Q9BR39 696 aaPredicted RBP-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 CLEC7AQ9BXN2 247 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 CHIAQ9BZP6 476 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 WWTR1Q9GZV5 400 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 HIPK3Q9H422 1215 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 LINC00846Q9NV44 126 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 OR6C3Q9NZP0 311 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 SEL1LQ9UBV2 794 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 PEF1Q9UBV8 284 aaKnown RBP-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 CDH22Q9UJ99 828 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 TINAGQ9UJW2 476 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 CHTOPQ9Y3Y2 248 aaKnown RBP-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 CFAP20Q9Y6A4 193 aaKnown RBP-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZFP37Q9Y6Q3 630 aaPredicted RBP-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 CUBNO60494 3623 aa-0.68□□□□□ -2.52
RNU6-540P-201ENST00000384622 MXRA5Q9NR99 2828 aa-0.69□□□□□ -2.52
RNU6-540P-201ENST00000384622 LRRK2Q5S007 2527 aa-0.69□□□□□ -2.52
RNU6-540P-201ENST00000384622 CFAP46Q8IYW2 2715 aa-0.69□□□□□ -2.52
RNU6-540P-201ENST00000384622 NACAE9PAV3 2078 aa-0.69□□□□□ -2.52
RNU6-540P-201ENST00000384622 C17orf102A2RUQ5 167 aa-0.69□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms