RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 RUBCNQ92622 972 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 HDAC10Q969S8 669 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 ARRDC3Q96B67 414 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 RUFY1Q96T51 708 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 AGAP2Q99490 1192 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 LTB4R2Q9NPC1 389 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 TARSL2A2RTX5 802 aaKnown RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 SDR42E2A6NKP2 422 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 NDST3O95803 873 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 ASLP04424 464 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 NDUFV2P19404 249 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 ACSL1P33121 698 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 ARSDP51689 593 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 CCINQ13939 588 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 QPCTQ16769 361 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 PUS10Q3MIT2 529 aaKnown RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 PRAMEF14Q5SWL7 426 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 PCGF5Q86SE9 256 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 TEX26Q8N6G2 289 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 ZNF599Q96NL3 588 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 FAM129BQ96TA1 746 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 SARS2Q9NP81 518 aaKnown RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 FKBPLQ9UIM3 349 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 CRYL1Q9Y2S2 319 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 SHISA7A6NL88 538 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 GOLGA8RI6L899 631 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 PGLSO95336 258 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 ELFN1P0C7U0 828 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 CHRNB1P11230 501 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 CR2P20023 1033 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 PLK1P53350 603 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 AP1S1P61966 158 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 MPP3Q13368 585 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 CRY1Q16526 586 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 TJAP1Q5JTD0 557 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 SEL1L3Q68CR1 1132 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 RD3Q7Z3Z2 195 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 ZCCHC9Q8N567 271 aaKnown RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 PPHLN1Q8NEY8 458 aaKnown RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 MDGA1Q8NFP4 955 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 FBF1Q8TES7 1133 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 RTP4Q96DX8 246 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 WDR83Q9BRX9 315 aaKnown RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 PRDM16Q9HAZ2 1276 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 IARS2Q9NSE4 1012 aaKnown RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 NINJ2Q9NZG7 142 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 FAM169AQ9Y6X4 670 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 FSBPO95073 299 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 HSD17B3P37058 310 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 BMPR2Q13873 1038 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 RFTN1Q14699 578 aaPredicted RBP9.23□□□□□ -0.93
USP4-202ENST00000351842 PREPLQ4J6C6 727 aaPredicted RBP9.23□□□□□ -0.93
USP4-202ENST00000351842 TMC3Q7Z5M5 1100 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 DENND6AQ8IWF6 608 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 AADATQ8N5Z0 425 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 BBOF1Q8ND07 529 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 EPS8L3Q8TE67 593 aaKnown RBP9.23□□□□□ -0.93
USP4-202ENST00000351842 DNASE1L2Q92874 299 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 SLCO2A1Q92959 643 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 FCRL3Q96P31 734 aaPredicted RBP9.23□□□□□ -0.93
USP4-202ENST00000351842 TMEM245Q9H330 911 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 ZFYVE1Q9HBF4 777 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 MRPS17Q9Y2R5 130 aaKnown RBP9.23□□□□□ -0.93
USP4-202ENST00000351842 PI4KAP42356 2102 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 FAM186AA6NE01 2351 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 A0A1W2PQF6 199 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 C1QTNF3-AMACRE9PGA6 284 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 PRNPP04156 253 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 SRPRAP08240 638 aaKnown RBP9.23□□□□□ -0.93
USP4-202ENST00000351842 ATXN1LP0C7T5 689 aaKnown RBP9.23□□□□□ -0.93
USP4-202ENST00000351842 LHCGRP22888 699 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 MAP9Q49MG5 647 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 CEP85LQ5SZL2 805 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 DENND5AQ6IQ26 1287 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 RANBP10Q6VN20 620 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 UNC5AQ6ZN44 842 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 MRGPRX1Q96LB2 322 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 TXNDC16Q9P2K2 825 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 PLAAQ9Y263 795 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 PRKAB1Q9Y478 270 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 KNTC1P50748 2209 aa9.23□□□□□ -0.93
USP4-202ENST00000351842 EXOC1LA0A1B0GW35 172 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 IGLON5A6NGN9 336 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 MAN2B1O00754 1011 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 MAP3K13O43283 966 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 TIMM44O43615 452 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 CA4P22748 312 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 PMLP29590 882 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 OAS2P29728 719 aaKnown RBP9.22□□□□□ -0.93
USP4-202ENST00000351842 P2RY2P41231 377 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 KBTBD12Q3ZCT8 623 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 ZNF805Q5CZA5 627 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 ZNF470Q6ECI4 717 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 USP45Q70EL2 814 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 HDXQ7Z353 690 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 DSG4Q86SJ6 1040 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 CCDC97Q96F63 343 aaPredicted RBP9.22□□□□□ -0.93
USP4-202ENST00000351842 SHDQ96IW2 340 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 SPATA16Q9BXB7 569 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 GPR174Q9BXC1 333 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms