RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 CAPN14A8MX76 684 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 EFCAB14O75071 495 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 RHOP08100 348 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 OCRLQ01968 901 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 SLC44A4Q53GD3 710 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 CMPK2Q5EBM0 449 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 ATG16L1Q676U5 607 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 APCDD1Q8J025 514 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 RBM15BQ8NDT2 890 aaKnown RBP13.12□□□□□ -0.31
COL18A1-201ENST00000342220 SMG7Q92540 1137 aaKnown RBP13.12□□□□□ -0.31
COL18A1-201ENST00000342220 HDAC10Q969S8 669 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 C7orf26Q96N11 449 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 SLC28A3Q9HAS3 691 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 PCDHA11Q9Y5I1 949 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 SERPINF2P08697 491 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 PGAM1P18669 254 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 ALDH18A1P54886 795 aaKnown RBP13.12□□□□□ -0.31
COL18A1-201ENST00000342220 MAP7D1Q3KQU3 841 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 SMYD1Q8NB12 490 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 MCUQ8NE86 351 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 ACVR1CQ8NER5 493 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 OR13C4Q8NGS5 318 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 ELMO2Q96JJ3 720 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 POLR1EQ9GZS1 481 aaKnown RBP13.12□□□□□ -0.31
COL18A1-201ENST00000342220 SIRPGQ9P1W8 387 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 TMEM98Q9Y2Y6 226 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 MYOFQ9NZM1 2061 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 AURKAO14965 403 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 ITGB6P18564 788 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 HCAR3P49019 387 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 LSAMPQ13449 338 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 MAP7Q14244 749 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 CCDC149Q6ZUS6 474 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 TAS2R42Q7RTR8 314 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 NANOGNBQ7Z5D8 188 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 TMEM25Q86YD3 366 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 CAMK1DQ8IU85 385 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 DNAJC1Q96KC8 554 aaKnown RBP13.12□□□□□ -0.31
COL18A1-201ENST00000342220 ZBP1Q9H171 429 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 SH3GLB1Q9Y371 365 aa13.12□□□□□ -0.31
COL18A1-201ENST00000342220 LSM1O15116 133 aaKnown RBP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 ITGA2BP08514 1039 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 TPSB2P20231 275 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 PLK1P53350 603 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 TPSAB1Q15661 275 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 RARS2Q5T160 578 aaKnown RBP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 PPP2R2DQ66LE6 453 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 MSANTD2Q6P1R3 559 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 ADGRD2Q7Z7M1 963 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 MRPL43Q8N983 215 aaKnown RBP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 SPPL3Q8TCT6 385 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 CYB5D2Q8WUJ1 264 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 TBATAQ96M53 351 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 RILPQ96NA2 401 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 EBF4Q9BQW3 602 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 IGSF9Q9P2J2 1179 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 CYBBP04839 570 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 KPNA1P52294 538 aaPredicted RBP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 DUS1LQ6P1R4 473 aaKnown RBP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 CRLF3Q8IUI8 442 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 SLC41A1Q8IVJ1 513 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 C2orf15Q8WU43 125 aaKnown RBP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 NMD3Q96D46 503 aaKnown RBP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 TSNARE1Q96NA8 513 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 OMDQ99983 421 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 FRMD8Q9BZ67 464 aaPredicted RBP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 WWP1Q9H0M0 922 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 STX18Q9P2W9 335 aaKnown RBP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 TLK1Q9UKI8 766 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 HBS1LQ9Y450 684 aaKnown RBP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 VWA8A3KMH1 1905 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 MAGEB3O15480 346 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 SMAD6O43541 496 aaKnown RBP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 BPGMP07738 259 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 ALPIP09923 528 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 UBAP2LQ14157 1087 aaKnown RBP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 FAM91A1Q658Y4 838 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 PACS1Q6VY07 963 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 BNIPLQ7Z465 357 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 TMPRSS6Q8IU80 811 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 PGBD5Q8N414 524 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 ZSWIM3Q96MP5 696 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 SIKE1Q9BRV8 207 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 THTPAQ9BU02 230 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 HERC2P3Q9BVR0 1158 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 CYP4F12Q9HCS2 524 aa13.11□□□□□ -0.31
COL18A1-201ENST00000342220 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.11□□□□□ -0.31
COL18A1-201ENST00000342220 ZNF638Q14966 1978 aaKnown RBP13.1□□□□□ -0.31
COL18A1-201ENST00000342220 A0A0J9YVX5 310 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 A0A1B0GVM2 712 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 TCAF2A6NFQ2 919 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 FAM159BA6NKW6 160 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 PRR5-ARHGAP8B1AHC4 643 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 LEFTY2O00292 366 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 PRAMEF12O95522 483 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 IGFBP4P22692 258 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 SERPINH1P50454 418 aaKnown RBP13.1□□□□□ -0.31
COL18A1-201ENST00000342220 ARHGAP8P85298 464 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 SERINC3Q13530 473 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms