RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 GRIA4P48058 902 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 PRIM2P49643 509 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 CXCR3P49682 368 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 LRRC74AQ0VAA2 488 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 CREG2Q8IUH2 290 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 HNRNPLLQ8WVV9 542 aaKnown RBP10.18□□□□□ -0.78
USP54-201ENST00000339859 CMTM5Q96DZ9 223 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 WDR26Q9H7D7 661 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 VTI1BQ9UEU0 232 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 NDUFA9Q16795 377 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 C22orf39Q6P5X5 142 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 GKN2Q86XP6 184 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 HID1Q8IV36 788 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 TRIML2Q8N7C3 387 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 TTC29Q8NA56 475 aaPredicted RBP10.18□□□□□ -0.78
USP54-201ENST00000339859 OR2AP1Q8NGE2 309 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 MRPL38Q96DV4 380 aaKnown RBP10.18□□□□□ -0.78
USP54-201ENST00000339859 L2HGDHQ9H9P8 463 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 PIGVQ9NUD9 493 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 PADI4Q9UM07 663 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 ENTPD4Q9Y227 616 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 DTNAQ9Y4J8 743 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 WNT9AO14904 365 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 ALDH9A1P49189 494 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 FBXO43Q4G163 708 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 HFE2Q6ZVN8 426 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 C11orf74Q86VG3 221 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 GPR135Q8IZ08 494 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 NETO2Q8NC67 525 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 PIP4K2CQ8TBX8 421 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 LRRN4Q8WUT4 740 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 DTNBP1Q96EV8 351 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 SLC38A3Q99624 504 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 CFHR5Q9BXR6 569 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 TTYH3Q9C0H2 523 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 XYLT2Q9H1B5 865 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 RPS6KB2Q9UBS0 482 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 ZNF711Q9Y462 761 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 SKAP2O75563 359 aaPredicted RBP10.18□□□□□ -0.78
USP54-201ENST00000339859 IL10P22301 178 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 CDH5P33151 784 aaPredicted RBP10.18□□□□□ -0.78
USP54-201ENST00000339859 RAB10P61026 200 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 CRADDP78560 199 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 GBE1Q04446 702 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 MSLNQ13421 630 aaPredicted RBP10.18□□□□□ -0.78
USP54-201ENST00000339859 DGKKQ5KSL6 1271 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 INPP5DQ92835 1189 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 PHF21BQ96EK2 531 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 MAGEB18Q96M61 343 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 CYP2S1Q96SQ9 504 aa10.18□□□□□ -0.78
USP54-201ENST00000339859 C6orf203Q9P0P8 240 aaPredicted RBP10.18□□□□□ -0.78
USP54-201ENST00000339859 TPP1O14773 563 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 SHHQ15465 462 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 SNAP47Q5SQN1 464 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 UNC5AQ6ZN44 842 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 BBS7Q8IWZ6 715 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 EIF1ADQ8N9N8 165 aaKnown RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 FAM3CQ92520 227 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 FAIM2Q9BWQ8 316 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 GTPBP2Q9BX10 602 aaKnown RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 EIF2B3Q9NR50 452 aaKnown RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 PCDHGC4Q9Y5F7 938 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 PIAS3Q9Y6X2 628 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 PRAMEF1O95521 474 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 ZNF30P17039 623 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 PPIDQ08752 370 aaKnown RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 SPIDRQ14159 915 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 DSC3Q14574 896 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 TMEM240Q5SV17 173 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 PAGE2Q7Z2X7 111 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 BBS4Q96RK4 519 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 SHCBP1LQ9BZQ2 653 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 MID1IP1Q9NPA3 183 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 C2orf71A6NGG8 1288 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 GRXCR1A8MXD5 290 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 UPK3BL1B0FP48 263 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 UPK3BL2E5RIL1 263 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 ATXN1P54253 815 aaKnown RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 NR6A1Q15406 480 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 AASDHQ4L235 1098 aaPredicted RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 TCEAL5Q5H9L2 206 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 SNX30Q5VWJ9 437 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 ZNF567Q8N184 647 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 RASGEF1CQ8N431 466 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 ZNF514Q96K75 400 aaPredicted RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 IGSF9Q9P2J2 1179 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 SUSD2Q9UGT4 822 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 TCAF1Q9Y4C2 921 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 LILRB3O75022 631 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 EIF2S1P05198 315 aaKnown RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 ITGB1P05556 798 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 NTSP30990 170 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 IRF8Q02556 426 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 DHCR24Q15392 516 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 KYAT3Q6YP21 454 aaKnown RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 PRELID2Q8N945 189 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 PLEKHO2Q8TD55 490 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 ART4Q93070 314 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 DPEP2Q9H4A9 486 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 LRRC37AA6NMS7 1700 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms