RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ESRRGP62508 458 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 KDSRQ06136 332 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 C10orf62Q5T681 223 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 C14orf80Q86SX3 495 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 KRT78Q8N1N4 520 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 PYROXD2Q8N2H3 581 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 HERVK_113Q902F9 699 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 RTP4Q96DX8 246 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 COPS7BQ9H9Q2 264 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 PAK6Q9NQU5 681 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 CHRAC1Q9NRG0 131 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 AKAP7Q9P0M2 348 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 SPASTQ9UBP0 616 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 MGAT4DA6NG13 374 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 HNRNPRO43390 633 aaKnown RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 METTL18O95568 372 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 FSHRP23945 695 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 PNLIPRP1P54315 467 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 CACNG1Q06432 222 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 MS4A13Q5J8X5 152 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 TXNRD3NBQ6F5E7 133 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 CMTM8Q8IZV2 173 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 SNX31Q8N9S9 440 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 PPP3R2Q96LZ3 170 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 TEX12Q9BXU0 123 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 MFSD1Q9H3U5 465 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 RXFP1Q9HBX9 757 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 ZDHHC18Q9NUE0 388 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 INTS10Q9NVR2 710 aaKnown RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 FAM32AQ9Y421 112 aaKnown RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 PIPSLA2A3N6 862 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 SCAMP3O14828 347 aaKnown RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 PER2O15055 1255 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 E2F6O75461 281 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 IFNA14P01570 189 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 SPATA31D3P0C874 917 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 BLKP51451 505 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 RAP1GDS1P52306 607 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 DSC2Q02487 901 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 TRMT5Q32P41 509 aaKnown RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 NCBP2-AS2Q69YL0 99 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 ANGPTL8Q6UXH0 198 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 SPATA31D4Q6ZUB0 917 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 YTHDF3Q7Z739 585 aaKnown RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 TMPRSS6Q8IU80 811 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 PTGR2Q8N8N7 351 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 JADE3Q92613 823 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 ZNF75CPQ92670 426 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 THOC1Q96FV9 657 aaKnown RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 CDKN2AIPNLQ96HQ2 116 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 RMND5AQ9H871 391 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 C10orf88Q9H8K7 445 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 FBRSQ9HAH7 460 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 E7ESA3 106 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 DYRK3O43781 588 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 SKAP2O75563 359 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 DGKIO75912 1065 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 RP1P56715 2156 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 NKX3-2P78367 333 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 ZNF697Q5TEC3 545 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 KIAA1324Q6UXG2 1013 aaKnown RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 MILR1Q7Z6M3 343 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 AHI1Q8N157 1196 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 ZNF276Q8N554 614 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 TRIML2Q8N7C3 387 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 MRPL43Q8N983 215 aaKnown RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 NAT8LQ8N9F0 302 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 TNIP2Q8NFZ5 429 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 CLEC4CQ8WTT0 213 aa6.88□□□□□ -1.31
SF3B1-201ENST00000335508 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-201ENST00000335508 ANKRD66B4E2M5 251 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 FAM189A1O60320 539 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 EDF1O60869 148 aaKnown RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 SASH3O75995 380 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 CCNHP51946 323 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 ERVK-21P61565 698 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 AP2B1P63010 937 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 CES3Q6UWW8 571 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 PHYKPLQ8IUZ5 450 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 AGR3Q8TD06 166 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 NMUR1Q9HB89 426 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 MAN1C1Q9NR34 630 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 SNX15Q9NRS6 342 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 FBXO10Q9UK96 956 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 SVILO95425 2214 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 PIRTP0C851 137 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 ETS1P14921 441 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 PSMC3P17980 439 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 WNT7BP56706 349 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 IRX1P78414 480 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-201ENST00000335508 CUL3Q13618 768 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 CARD16Q5EG05 197 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 CLLU1OSQ5K130 101 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 CERCAMQ5T4B2 595 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 RAET1GQ6H3X3 334 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 LZICQ8WZA0 190 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 NXPE3Q969Y0 559 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 SIPA1Q96FS4 1042 aa6.87□□□□□ -1.31
SF3B1-201ENST00000335508 HAPLN2Q9GZV7 340 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms