RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 DDX5P17844 614 aaKnown RBP3.44□□□□□ -1.86
HMGB1-201ENST00000326004 RPL3P39023 403 aaKnown RBP3.44□□□□□ -1.86
HMGB1-201ENST00000326004 MLH1P40692 756 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 AMTP48728 403 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 PRAMEP78395 509 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 NIPAL4Q0D2K0 466 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 Q0VFX4 171 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 TRAF2Q12933 501 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 ZNF260Q3ZCT1 412 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 PPP6R3Q5H9R7 873 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-201ENST00000326004 EFHC1Q5JVL4 640 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 WDR78Q5VTH9 848 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 AWAT2Q6E213 333 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 C8orf82Q6P1X6 216 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-201ENST00000326004 PDXDC1Q6P996 788 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 CYP20A1Q6UW02 462 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 DLK2Q6UY11 383 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 CCDC129Q6ZRS4 1044 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 SHFQ7M4L6 423 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 PCGF5Q86SE9 256 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 WDR63Q8IWG1 891 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 SLC35F3Q8IY50 421 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 AADATQ8N5Z0 425 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 CREB3L4Q8TEY5 395 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 USP6NLQ92738 828 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 SLC41A2Q96JW4 573 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 LRFN5Q96NI6 719 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 TMEM47Q9BQJ4 181 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 IFIH1Q9BYX4 1025 aaKnown RBP3.44□□□□□ -1.86
HMGB1-201ENST00000326004 EIF2B3Q9NR50 452 aaKnown RBP3.44□□□□□ -1.86
HMGB1-201ENST00000326004 FBXO2Q9UK22 296 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-201ENST00000326004 ERVK-11Q9UQG0 969 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 INSL5Q9Y5Q6 135 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 PTGDR2Q9Y5Y4 395 aa3.44□□□□□ -1.86
HMGB1-201ENST00000326004 A0A1B0GVT2 93 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 A0A1W2PQF6 199 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 FSD2A1L4K1 749 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 IFNL4K9M1U5 179 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 SNAP23O00161 211 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 PTP4A3O75365 173 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 NDUFS3O75489 264 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 SLC25A12O75746 678 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 VNN2O95498 520 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 POLGP54098 1239 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-201ENST00000326004 DRG2P55039 364 aaKnown RBP3.43□□□□□ -1.86
HMGB1-201ENST00000326004 NAE1Q13564 534 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 CRYMQ14894 314 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 COL28A1Q2UY09 1125 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 TDRD12Q587J7 1177 aaKnown RBP3.43□□□□□ -1.86
HMGB1-201ENST00000326004 SLC45A4Q5BKX6 768 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 CXorf66Q5JRM2 361 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-201ENST00000326004 TTI2Q6NXR4 508 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 ZNF549Q6P9A3 640 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 TMEM154Q6P9G4 183 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 QSOX2Q6ZRP7 698 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 C9orf47Q6ZRZ4 202 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 IKBIPQ70UQ0 350 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 MTSS1LQ765P7 747 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 TICAM2Q86XR7 235 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 RPAP2Q8IXW5 612 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-201ENST00000326004 PELI3Q8N2H9 469 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 PRR26Q8N8Z3 221 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 OR14A16Q8NHC5 309 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 SCFD2Q8WU76 684 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 ERGIC1Q969X5 290 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 ARHGEF26Q96DR7 871 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 HARBI1Q96MB7 349 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 TKTL2Q9H0I9 626 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 SYNCQ9H7C4 482 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 MRPL44Q9H9J2 332 aaKnown RBP3.43□□□□□ -1.86
HMGB1-201ENST00000326004 MKKSQ9NPJ1 570 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-201ENST00000326004 MAP3K20Q9NYL2 800 aaKnown RBP3.43□□□□□ -1.86
HMGB1-201ENST00000326004 FBXO9Q9UK97 447 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-201ENST00000326004 AGO1Q9UL18 857 aaKnown RBP3.43□□□□□ -1.86
HMGB1-201ENST00000326004 CORO1CQ9ULV4 474 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-201ENST00000326004 MYO6Q9UM54 1294 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 PCDHA7Q9UN72 937 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 MTMR6Q9Y217 621 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 ADAM18Q9Y3Q7 739 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 CEPT1Q9Y6K0 416 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 STON1Q9Y6Q2 735 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 NESP48681 1621 aa3.43□□□□□ -1.86
HMGB1-201ENST00000326004 SYNJ2O15056 1496 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 FAM237AA0A1B0GTK4 181 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 DYTNA2CJ06 578 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 MYO1GB0I1T2 1018 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 AKR1B15C9JRZ8 316 aaPredicted RBP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 TIMM23O14925 209 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 SCAMP1O15126 338 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 HSPA12AO43301 675 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 HNRNPCL1O60812 293 aaKnown RBP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 MLYCDO95822 493 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 GLUD1P00367 558 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 C21orf33P30042 268 aaPredicted RBP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 TM4SF1P30408 202 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 ARRB2P32121 409 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 PPARGP37231 505 aaPredicted RBP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 PIGAP37287 484 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 GLUD2P49448 558 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 MXI1P50539 228 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms