RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 ZNF781Q8N8C0 355 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 OR52E6Q96RD3 313 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 ZYG11BQ9C0D3 744 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 NKX1-2Q9UD57 310 aaPredicted RBP12.88□□□□□ -0.35
COL3A1-201ENST00000304636 SLC7A8Q9UHI5 535 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 SSR3Q9UNL2 185 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 BUD23O43709 281 aaKnown RBP12.88□□□□□ -0.35
COL3A1-201ENST00000304636 NTRK1P04629 796 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 SMIM11AP58511 58 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 CYP4F2P78329 520 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 CYP4F3Q08477 520 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 TMEM132BQ14DG7 1078 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 ALFQ53S48 1182 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 ARMC6Q6NXE6 501 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 PLPPR4Q7Z2D5 763 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 LRRC17Q8N6Y2 441 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 ING3Q9NXR8 418 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 GTF2A1LQ9UNN4 478 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 ANGPT4Q9Y264 503 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 SPATA31A6Q5VVP1 1343 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 CLDN25C9JDP6 229 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 DHX15O43143 795 aaKnown RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 B4GALT4O60513 344 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 CCNKO75909 580 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 PRKAR1AP10644 381 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 SRP54P61011 504 aaKnown RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 PCBP1Q15365 356 aaKnown RBP eCLIP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 TEX44Q53QW1 395 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 KRT74Q7RTS7 529 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 AHI1Q8N157 1196 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 LRRC52Q8N7C0 313 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 PHF10Q8WUB8 498 aaKnown RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 HDAC10Q969S8 669 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 ZCCHC2Q9C0B9 1178 aaKnown RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 DISP2A7MBM2 1401 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 MDM4O15151 490 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 RAB25P57735 213 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 PTSQ03393 145 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 CXCL9Q07325 125 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 DCAF12L1Q5VU92 463 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 OR4L1Q8NH43 312 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 TMEM169Q96HH4 297 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 GLT1D1Q96MS3 346 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 TUBGCP5Q96RT8 1024 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 MBD2Q9UBB5 411 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 ZNF221Q9UK13 617 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 COQ6Q9Y2Z9 468 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 H7C0S8 307 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 DNAJA2O60884 412 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 FADS2O95864 444 aaKnown RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 POLR2JP52435 117 aaKnown RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 FCHO2Q0JRZ9 810 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 PEX6Q13608 980 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 DLG2Q15700 870 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 MACC1Q6ZN28 852 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 RNF180Q86T96 592 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 KIAA0319LQ8IZA0 1049 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 HTRA1Q92743 480 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 NXNL1Q96CM4 212 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 MRPL42Q9Y6G3 142 aaKnown RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 CCDC189A1A4V9 331 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 RFXANKO14593 260 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 RGS10O43665 173 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 SGTAO43765 313 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 SERPINA1P01009 418 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 KHDRBS2Q5VWX1 349 aaKnown RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 TRMT11Q7Z4G4 463 aaKnown RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 VN1R5Q7Z5H4 357 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 PARP8Q8N3A8 854 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 HM13Q8TCT9 377 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 FAR1Q8WVX9 515 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 ADI1Q9BV57 179 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 MARCH2Q9P0N8 246 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 LRRC42Q9Y546 428 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 DGKBQ9Y6T7 804 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 BTN3A3O00478 584 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 CYP4B1P13584 511 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 DARSP14868 501 aaKnown RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 RPL3P39023 403 aaKnown RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 ATP12AP54707 1039 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 GBE1Q04446 702 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 MFSD10Q14728 455 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 SLC39A12Q504Y0 691 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 RNF19BQ6ZMZ0 732 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 MTSS1LQ765P7 747 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 ZNF671Q8TAW3 534 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 FAM84AQ96KN4 292 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 PANX1Q96RD7 426 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 SEMA3CQ99985 751 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 MLPHQ9BV36 600 aaPredicted RBP12.87□□□□□ -0.35
COL3A1-201ENST00000304636 DUSP16Q9BY84 665 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 CRISPLD1Q9H336 500 aa12.87□□□□□ -0.35
COL3A1-201ENST00000304636 CILPO75339 1184 aa12.86□□□□□ -0.35
COL3A1-201ENST00000304636 ALDH1A2O94788 518 aa12.86□□□□□ -0.35
COL3A1-201ENST00000304636 AP2A1O95782 977 aa12.86□□□□□ -0.35
COL3A1-201ENST00000304636 FGF1P05230 155 aa12.86□□□□□ -0.35
COL3A1-201ENST00000304636 HOXC6P09630 235 aa12.86□□□□□ -0.35
COL3A1-201ENST00000304636 PPIBP23284 216 aaKnown RBP12.86□□□□□ -0.35
COL3A1-201ENST00000304636 EPHB3P54753 998 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms