RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 NSRP1Q9H0G5 558 aaKnown RBP16.53■□□□□ 0.24
USP4-201ENST00000265560 TLK1Q9UKI8 766 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 RUVBL2Q9Y230 463 aaKnown RBP16.53■□□□□ 0.24
USP4-201ENST00000265560 PLIN3O60664 434 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 S1PR4O95977 384 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 PENKP01210 267 aaPredicted RBP16.53■□□□□ 0.24
USP4-201ENST00000265560 CYP17A1P05093 508 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 CSE1LP55060 971 aaKnown RBP16.53■□□□□ 0.24
USP4-201ENST00000265560 DLX2Q07687 328 aaPredicted RBP16.53■□□□□ 0.24
USP4-201ENST00000265560 NSUN2Q08J23 767 aaKnown RBP eCLIP16.53■□□□□ 0.24
USP4-201ENST00000265560 DLG1Q12959 904 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 ARMC12Q5T9G4 340 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 ATG14Q6ZNE5 492 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 TSPAN33Q86UF1 283 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 CNTN4Q8IWV2 1026 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 OR4L1Q8NH43 312 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 NXNL1Q96CM4 212 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 CCDC97Q96F63 343 aaPredicted RBP16.53■□□□□ 0.24
USP4-201ENST00000265560 RANBP9Q96S59 729 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 ABCF3Q9NUQ8 709 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 HAUS2Q9NVX0 235 aa16.53■□□□□ 0.24
USP4-201ENST00000265560 SRRM3A6NNA2 597 aaPredicted RBP16.52■□□□□ 0.24
USP4-201ENST00000265560 TTC34A8MYJ7 566 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 EDF1O60869 148 aaKnown RBP16.52■□□□□ 0.24
USP4-201ENST00000265560 FGF19O95750 216 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 UGT2B4P06133 528 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 ALADP13716 330 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 PMLP29590 882 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 CDKN2DP55273 166 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 RFWD2Q8NHY2 731 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 PPP1R14CQ8TAE6 165 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 MYO19Q96H55 970 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 SCYL1Q96KG9 808 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 TSSK1BQ9BXA7 367 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 GPR63Q9BZJ6 419 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 OR1I1O60431 355 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 GLRA3O75311 464 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 FSHRP23945 695 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 ALDH3A1P30838 453 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 ZNF140P52738 457 aaPredicted RBP16.52■□□□□ 0.24
USP4-201ENST00000265560 ECT2LQ008S8 904 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 GRM2Q14416 872 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 MBLAC2Q68D91 279 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 PSAPL1Q6NUJ1 521 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 OR2AP1Q8NGE2 309 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 AGR3Q8TD06 166 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 FAM167BQ9BTA0 163 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 DCDC2Q9UHG0 476 aa16.52■□□□□ 0.24
USP4-201ENST00000265560 TSR3Q9UJK0 312 aaKnown RBP16.52■□□□□ 0.24
USP4-201ENST00000265560 A0A0G2JND7 137 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 C2orf81A6NN90 581 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 STX7O15400 261 aaKnown RBP16.52■□□□□ 0.23
USP4-201ENST00000265560 ITM2AO43736 263 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 RPP40O75818 363 aaKnown RBP16.52■□□□□ 0.23
USP4-201ENST00000265560 CLDN7O95471 211 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 CRTAMO95727 393 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 BPGMP07738 259 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 STMN1P16949 149 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 CCNHP51946 323 aaPredicted RBP16.52■□□□□ 0.23
USP4-201ENST00000265560 USP4Q13107 963 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 FRG1Q14331 258 aaKnown RBP16.52■□□□□ 0.23
USP4-201ENST00000265560 CSHL1Q14406 222 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 TANGO2Q6ICL3 276 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 CENPLQ8N0S6 344 aaPredicted RBP16.52■□□□□ 0.23
USP4-201ENST00000265560 CELF5Q8N6W0 485 aaKnown RBP16.52■□□□□ 0.23
USP4-201ENST00000265560 PIH1D2Q8WWB5 315 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 E2F7Q96AV8 911 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 GDF15Q99988 308 aa16.52■□□□□ 0.23
USP4-201ENST00000265560 USP15Q9Y4E8 981 aaPredicted RBP16.52■□□□□ 0.23
USP4-201ENST00000265560 SLC7A4O43246 635 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 PGLSO95336 258 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 PROCP04070 461 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 CA5AP35218 305 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 CCR10P46092 362 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 ITGA9Q13797 1035 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 PCLAFQ15004 111 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 ZRANB3Q5FWF4 1079 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 FAM219BQ5XKK7 198 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 C22orf39Q6P5X5 142 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 RFLNAQ6ZTI6 216 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 SAMD11Q96NU1 681 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 SHCBP1LQ9BZQ2 653 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 MFSD1Q9H3U5 465 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 CATSPERZQ9NTU4 200 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 GTSE1Q9NYZ3 720 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 TBC1D14Q9P2M4 693 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 USP34Q70CQ2 3546 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 C1orf232A0A0U1RR37 186 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 HEPACAM2A8MVW5 462 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 PAPSS2O95340 614 aaPredicted RBP16.51■□□□□ 0.23
USP4-201ENST00000265560 MC4RP32245 332 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 SLC12A2P55011 1212 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 RAB10P61026 200 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 HYAL1Q12794 435 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 ZNF549Q6P9A3 640 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 ZNF449Q6P9G9 518 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 LEMD2Q8NC56 503 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 STYXQ8WUJ0 223 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 VOPP1Q96AW1 172 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 ASB16Q96NS5 453 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms