RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TM7SF2O76062 418 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 PSMG1O95456 288 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 S1PR4O95977 384 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 HMGA1P17096 107 aaKnown RBP10.67□□□□□ -0.7
CUX1-221ENST00000622516 CRABP2P29373 138 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 MSX2P35548 267 aaPredicted RBP10.67□□□□□ -0.7
CUX1-221ENST00000622516 LEPRP48357 1165 aaKnown RBP10.67□□□□□ -0.7
CUX1-221ENST00000622516 CDKN1CP49918 316 aaPredicted RBP10.67□□□□□ -0.7
CUX1-221ENST00000622516 TCHHL1Q5QJ38 904 aaPredicted RBP10.67□□□□□ -0.7
CUX1-221ENST00000622516 HECTD3Q5T447 861 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 TMCO4Q5TGY1 634 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 DEFB107AQ8IZN7 70 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 LRRC43Q8N309 656 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 GIMAP7Q8NHV1 300 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 TTC1Q99614 292 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 MRM3Q9HC36 420 aaKnown RBP10.67□□□□□ -0.7
CUX1-221ENST00000622516 RAP2CQ9Y3L5 183 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 SPO11Q9Y5K1 396 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 TMEM114B3SHH9 223 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 GPR39O43194 453 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 SNAP91O60641 907 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 ALOX15P16050 662 aaPredicted RBP10.67□□□□□ -0.7
CUX1-221ENST00000622516 HDCP19113 662 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 POU4F1Q01851 419 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 TLE2Q04725 743 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 RING1Q06587 406 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 ELAVL2Q12926 359 aaKnown RBP10.67□□□□□ -0.7
CUX1-221ENST00000622516 TAF11Q15544 211 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 SIKE1Q9BRV8 207 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 FAM96AQ9H5X1 160 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 PDFQ9HBH1 243 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 BPIFA1Q9NP55 256 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 SSX2IPQ9Y2D8 614 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 DOCK6Q96HP0 2047 aa10.67□□□□□ -0.7
CUX1-221ENST00000622516 FNDC1Q4ZHG4 1894 aaPredicted RBP10.66□□□□□ -0.7
CUX1-221ENST00000622516 PITPNM1O00562 1244 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 HDAC3O15379 428 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 STC2O76061 302 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 BAG2O95816 211 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 SERPINF2P08697 491 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 SLC11A2P49281 568 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 KLF10Q13118 480 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 TRIM60Q495X7 471 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 FSCBQ5H9T9 825 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 SLC8B1Q6J4K2 584 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 TLDC1Q6P9B6 456 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 HPS6Q86YV9 775 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 ENDOVQ8N8Q3 282 aaKnown RBP10.66□□□□□ -0.7
CUX1-221ENST00000622516 IGSF21Q96ID5 467 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 MRPL9Q9BYD2 267 aaKnown RBP10.66□□□□□ -0.7
CUX1-221ENST00000622516 FAM50BQ9Y247 325 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 UBA6A0AVT1 1052 aaPredicted RBP10.66□□□□□ -0.7
CUX1-221ENST00000622516 H3BNC9 293 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 CD3EAPO15446 510 aaKnown RBP10.66□□□□□ -0.7
CUX1-221ENST00000622516 APOA4P06727 396 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 CDH13P55290 713 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 YBEYP58557 167 aaPredicted RBP10.66□□□□□ -0.7
CUX1-221ENST00000622516 FAM83EQ2M2I3 478 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 ZNF549Q6P9A3 640 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 CCDC117Q8IWD4 279 aaPredicted RBP10.66□□□□□ -0.7
CUX1-221ENST00000622516 RNF148Q8N7C7 305 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 PYDC1Q8WXC3 89 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 PPP1R2P1Q96PQ5 205 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 MRPL57Q9BQC6 102 aaKnown RBP10.66□□□□□ -0.7
CUX1-221ENST00000622516 CINPQ9BW66 212 aaPredicted RBP10.66□□□□□ -0.7
CUX1-221ENST00000622516 MUC3BQ9H195 1237 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 FNIP2Q9P278 1114 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 MTRRQ9UBK8 725 aa10.66□□□□□ -0.7
CUX1-221ENST00000622516 AGO1Q9UL18 857 aaKnown RBP10.66□□□□□ -0.7
CUX1-221ENST00000622516 LRRC14BA6NHZ5 514 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 A8MT66 165 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 PPP6CO00743 305 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 GLP2RO95838 553 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 COX4I1P13073 169 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 MAPKAPK2P49137 400 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 ATXN3P54252 364 aaPredicted RBP10.65□□□□□ -0.7
CUX1-221ENST00000622516 OXCT1P55809 520 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 ZXDBP98169 803 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 PRKAA1Q13131 559 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 RNF219Q5W0B1 726 aaPredicted RBP10.65□□□□□ -0.7
CUX1-221ENST00000622516 EFHBQ8N7U6 833 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 OR4K2Q8NGD2 314 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 OR6K2Q8NGY2 324 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 CALML6Q8TD86 181 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 STN1Q9H668 368 aaKnown RBP10.65□□□□□ -0.7
CUX1-221ENST00000622516 CWH43Q9H720 699 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 PLK2Q9NYY3 685 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 UBA2Q9UBT2 640 aaPredicted RBP10.65□□□□□ -0.7
CUX1-221ENST00000622516 ATP6AP2A0A1C7CYW4 349 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 GOLGA8CPA6NN73 597 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 PRRG1O14668 218 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 SLC7A4O43246 635 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 MAGEC1O60732 1142 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 ATP6AP2O75787 350 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 RHOCP08134 193 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 LTA4HP09960 611 aaKnown RBP10.65□□□□□ -0.7
CUX1-221ENST00000622516 COL6A2P12110 1019 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 ITGAXP20702 1163 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 PMLP29590 882 aa10.65□□□□□ -0.7
CUX1-221ENST00000622516 ABL2P42684 1182 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms