RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ELNP15502 786 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 ETFBP38117 255 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 ATP4BP51164 291 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 PRMT2P55345 433 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 TNK2Q07912 1038 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 DLG2Q15700 870 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 DPYSL2Q16555 572 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 XKR3Q5GH77 459 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 OR6B2Q6IFH4 312 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 CRTC3Q6UUV7 619 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 LILRB4Q8NHJ6 448 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 NPLOC4Q8TAT6 608 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 NSUN6Q8TEA1 469 aaKnown RBP10.87□□□□□ -0.67
UPF3A-212ENST00000619079 ZNF669Q96BR6 464 aaPredicted RBP10.87□□□□□ -0.67
UPF3A-212ENST00000619079 VPS39Q96JC1 886 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 TAAR1Q96RJ0 339 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 BCO2Q9BYV7 579 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 ING2Q9H160 280 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 CAB39LQ9H9S4 337 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 SIAEQ9HAT2 523 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 CCDC167Q9P0B6 97 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 ACTR3BQ9P1U1 418 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 VPS51Q9UID3 782 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 POU2F3Q9UKI9 436 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 PTCH2Q9Y6C5 1203 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 DNAJC25-GNG10A0A024R161 153 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 CLIC3O95833 236 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 KPNA2P52292 529 aaKnown RBP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 MAPK10P53779 464 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 ADARB1P78563 741 aaKnown RBP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 DMPKQ09013 629 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 CDC20Q12834 499 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 SLC12A1Q13621 1099 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 SKIV2LQ15477 1246 aaKnown RBP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 CCL14Q16627 93 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 ZNF792Q3KQV3 632 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 ZNF667Q5HYK9 610 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 SLX4IPQ5VYV7 408 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 XAF1Q6GPH4 301 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 TRNP1Q6NT89 227 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 SWSAP1Q6NVH7 229 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 KIAA0408Q6ZU52 694 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 LINC00523Q86TU6 105 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 TMEM135Q86UB9 458 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 ZCCHC7Q8N3Z6 543 aaKnown RBP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 HDAC10Q969S8 669 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 GPRASP2Q96D09 838 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 LHPPQ9H008 270 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 SP140LQ9H930 580 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 BFARQ9NZS9 450 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 MTRRQ9UBK8 725 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 WARS2Q9UGM6 360 aaKnown RBP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 CARD8Q9Y2G2 431 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 ZSWIM8A7E2V4 1837 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 SIP14410 1827 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 ILVBLA1L0T0 632 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 TTC24A2A3L6 582 aaPredicted RBP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 FAM149AA5PLN7 773 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 TNFRSF10AO00220 468 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 BCAS1O75363 584 aaPredicted RBP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 CHEK2O96017 543 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 VDRP11473 427 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 NCAM1P13591 858 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 CCR10P46092 362 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 PLA2G16P53816 162 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 ACTR2P61160 394 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 STX1BP61266 288 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 TFAMQ00059 246 aaKnown RBP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 ILF2Q12905 390 aaKnown RBP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 MTERF2Q49AM1 385 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 AASDHQ4L235 1098 aaPredicted RBP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 FAM183BPQ6ZVS7 135 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 CMTR2Q8IYT2 770 aaKnown RBP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 TBC1D21Q8IYX1 336 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 TMEM151AQ8N4L1 468 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 PDZD8Q8NEN9 1154 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 DNERQ8NFT8 737 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 SPPL2BQ8TCT7 592 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 LRRN4Q8WUT4 740 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 OSCP1Q8WVF1 389 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 BTN2A3PQ96KV6 586 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 GPR22Q99680 433 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 PDCD2LQ9BRP1 358 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 ATP13A3Q9H7F0 1226 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 MEAF6Q9HAF1 191 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 EML4Q9HC35 981 aaKnown RBP10.86□□□□□ -0.67
UPF3A-212ENST00000619079 FBXO8Q9NRD0 319 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 ABCD2Q9UBJ2 740 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 SFMBT1Q9UHJ3 866 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 ENPP5Q9UJA9 477 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 VWA7Q9Y334 891 aa10.86□□□□□ -0.67
UPF3A-212ENST00000619079 MAGEB16A2A368 324 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 CCDC78A2IDD5 438 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 SOWAHBA6NEL2 793 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 ASB14A6NK59 587 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 RNF103O00237 685 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 SYNCRIPO60506 623 aaKnown RBP10.85□□□□□ -0.67
UPF3A-212ENST00000619079 UGT2B11O75310 529 aa10.85□□□□□ -0.67
UPF3A-212ENST00000619079 MYCP01106 439 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms