RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 NAA30Q147X3 362 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-207ENST00000597136 TRADDQ15628 312 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 FAXCQ5TGI0 409 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 LAIR1Q6GTX8 287 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 TTC7BQ86TV6 843 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 C11orf74Q86VG3 221 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 MYRIPQ8NFW9 859 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 KLK6Q92876 244 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 SNF8Q96H20 258 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 FCRL5Q96RD9 977 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 GORASP1Q9BQQ3 440 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 OSBPL1AQ9BXW6 950 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 POLR1EQ9GZS1 481 aaKnown RBP15.1■□□□□ 0.01
TRIM28-207ENST00000597136 SLC25A51Q9H1U9 297 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 DPH5Q9H2P9 285 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 ITM2BQ9Y287 266 aa15.1■□□□□ 0.01
TRIM28-207ENST00000597136 ATXN2Q99700 1313 aaKnown RBP15.1■□□□□ 0.01
TRIM28-207ENST00000597136 ARID1BQ8NFD5 2236 aaPredicted RBP15.09■□□□□ 0.01
TRIM28-207ENST00000597136 SEC31AO94979 1220 aaKnown RBP15.09■□□□□ 0.01
TRIM28-207ENST00000597136 NEK3P51956 506 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 BASP1P80723 227 aaKnown RBP15.09■□□□□ 0.01
TRIM28-207ENST00000597136 SEMA5AQ13591 1074 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 PTPRRQ15256 657 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 CADM4Q8NFZ8 388 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 OR2T34Q8NGX1 318 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 SPATA22Q8NHS9 363 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 PIGKQ92643 395 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 IMP4Q96G21 291 aaKnown RBP15.09■□□□□ 0.01
TRIM28-207ENST00000597136 PPP1R16AQ96I34 528 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 ZNF641Q96N77 438 aaPredicted RBP15.09■□□□□ 0.01
TRIM28-207ENST00000597136 TUBGCP5Q96RT8 1024 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 ATP13A3Q9H7F0 1226 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 GDF3Q9NR23 364 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 GRHL1Q9NZI5 618 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 WHRNQ9P202 907 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 EIF2B4Q9UI10 523 aaKnown RBP15.09■□□□□ 0.01
TRIM28-207ENST00000597136 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.09■□□□□ 0.01
TRIM28-207ENST00000597136 FADS3Q9Y5Q0 445 aa15.09■□□□□ 0.01
TRIM28-207ENST00000597136 LRRC72A6NJI9 287 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 PCNX2A6NKB5 2137 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 PATE3B3GLJ2 98 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 DNALI1O14645 258 aaPredicted RBP15.08■□□□□ 0
TRIM28-207ENST00000597136 TP73O15350 636 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 SLC7A4O43246 635 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 EPN2O95208 641 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 PDHA1P08559 390 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 CES1P23141 567 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 SERPINA4P29622 427 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 MAT2AP31153 395 aaKnown RBP15.08■□□□□ 0
TRIM28-207ENST00000597136 TERF1P54274 439 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 AP1S1P61966 158 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 SPEM2Q0P670 501 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 SPDYCQ5MJ68 293 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 IZUMO3Q5VZ72 239 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 LYSMD4Q5XG99 296 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 KIAA0895LQ68EN5 471 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 PRPF39Q86UA1 669 aaKnown RBP15.08■□□□□ 0
TRIM28-207ENST00000597136 KLHDC8BQ8IXV7 354 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 IFT20Q8IY31 132 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 RGL4Q8IZJ4 473 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 GPR161Q8N6U8 529 aaKnown RBP15.08■□□□□ 0
TRIM28-207ENST00000597136 PDCD6IPQ8WUM4 868 aaKnown RBP15.08■□□□□ 0
TRIM28-207ENST00000597136 CPT1BQ92523 772 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 ECHDC3Q96DC8 303 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 OXNAD1Q96HP4 312 aaPredicted RBP15.08■□□□□ 0
TRIM28-207ENST00000597136 SMIM14Q96QK8 99 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 RBM15Q96T37 977 aaKnown RBP eCLIP15.08■□□□□ 09e-10■■□□□ 11.6
TRIM28-207ENST00000597136 ORAI3Q9BRQ5 295 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 PARD6AQ9NPB6 346 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 DKK3Q9UBP4 350 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 PILRBQ9UKJ0 227 aa15.08■□□□□ 0
TRIM28-207ENST00000597136 TPX2Q9ULW0 747 aaKnown RBP15.08■□□□□ 0
TRIM28-207ENST00000597136 ZFR2Q9UPR6 939 aaKnown RBP15.08■□□□□ 0
TRIM28-207ENST00000597136 GOLGA4Q13439 2230 aaKnown RBP15.08■□□□□ 0
TRIM28-207ENST00000597136 CNOT1A5YKK6 2376 aaKnown RBP15.08■□□□□ 0
TRIM28-207ENST00000597136 WNT9AO14904 365 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 AREL1O15033 823 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 CTIFO43310 598 aaKnown RBP15.07■□□□□ 0
TRIM28-207ENST00000597136 HTRA2O43464 458 aaPredicted RBP15.07■□□□□ 0
TRIM28-207ENST00000597136 RNGTTO60942 597 aaKnown RBP15.07■□□□□ 0
TRIM28-207ENST00000597136 PCDH8O95206 1070 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 RETP07949 1114 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 CD86P42081 329 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 MAGEA6P43360 314 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 PRPSAP1Q14558 356 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 KCNJ11Q14654 390 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 GRM3Q14832 879 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 UGP2Q16851 508 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 RNASEH2BQ5TBB1 312 aaKnown RBP15.07■□□□□ 0
TRIM28-207ENST00000597136 PCGF5Q86SE9 256 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 DNASE2BQ8WZ79 361 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 SNX19Q92543 992 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 TADA1Q96BN2 335 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 FAM122AQ96E09 287 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 LOXL4Q96JB6 756 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 PPP1R2P1Q96PQ5 205 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 MLPHQ9BV36 600 aaPredicted RBP15.07■□□□□ 0
TRIM28-207ENST00000597136 MIR1-1HGQ9H1L0 117 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 FAM114A2Q9NRY5 505 aa15.07■□□□□ 0
TRIM28-207ENST00000597136 UBP1Q9NZI7 540 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms