RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 CFAP46Q8IYW2 2715 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 A0A1W2PQ67 120 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 CFAP69A5D8W1 941 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 C3orf70A6NLC5 250 aaPredicted RBP15.19■□□□□ 0.02
TRIM28-205ENST00000595028 GOLGA8CPA6NN73 597 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 ENC1O14682 589 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 CPP00450 1065 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 MX2P20592 715 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 FECHP22830 423 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 CYLC1P35663 651 aaPredicted RBP15.19■□□□□ 0.02
TRIM28-205ENST00000595028 POLR2LP62875 67 aaKnown RBP15.19■□□□□ 0.02
TRIM28-205ENST00000595028 TRAF2Q12933 501 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 AGERQ15109 404 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 IFI16Q16666 785 aaKnown RBP15.19■□□□□ 0.02
TRIM28-205ENST00000595028 ALG1LQ6GMV1 187 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 TIGD7Q6NT04 549 aaPredicted RBP15.19■□□□□ 0.02
TRIM28-205ENST00000595028 RHOT1Q8IXI2 618 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 SLC25A45Q8N413 288 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 PLD5Q8N7P1 536 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 ZNF830Q96NB3 372 aaPredicted RBP15.19■□□□□ 0.02
TRIM28-205ENST00000595028 TSGA13Q96PP4 275 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 CAAP1Q9H8G2 361 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 NT5MQ9NPB1 228 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 MBNL1Q9NR56 388 aaKnown RBP15.19■□□□□ 0.02
TRIM28-205ENST00000595028 UCKL1Q9NWZ5 548 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 DTLQ9NZJ0 730 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 PLXNB3Q9ULL4 1909 aa15.19■□□□□ 0.02
TRIM28-205ENST00000595028 CYSRT1A8MQ03 144 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 H3BM21 787 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 TOR1BO14657 336 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 MATN3O15232 486 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 SPOPO43791 374 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 LZTS3O60299 673 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-205ENST00000595028 LDOC1O95751 146 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-205ENST00000595028 CSF2P04141 144 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 ELFN1P0C7U0 828 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 COMTP21964 271 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 DGKAP23743 735 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 CCNCP24863 283 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 ACADVLP49748 655 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 THOP1P52888 689 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 HNRNPKP61978 463 aaKnown RBP eCLIP15.18■□□□□ 0.02
TRIM28-205ENST00000595028 YPEL5P62699 121 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 DNAJC3Q13217 504 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 LRRC14Q15048 493 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 SPA17Q15506 151 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 WSCD2Q2TBF2 565 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 ZNF542PQ5EBM4 170 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 SLC9A4Q6AI14 798 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 MACC1Q6ZN28 852 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-205ENST00000595028 PDCD6IPQ8WUM4 868 aaKnown RBP15.18■□□□□ 0.02
TRIM28-205ENST00000595028 HDAC11Q96DB2 347 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 SEMA3CQ99985 751 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 POLR1EQ9GZS1 481 aaKnown RBP15.18■□□□□ 0.02
TRIM28-205ENST00000595028 LUC7LQ9NQ29 371 aaKnown RBP15.18■□□□□ 0.02
TRIM28-205ENST00000595028 B4GALT6Q9UBX8 382 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 RAXQ9Y2V3 346 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 HYOU1Q9Y4L1 999 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 PCDHGC4Q9Y5F7 938 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 PCDHA13Q9Y5I0 950 aa15.18■□□□□ 0.02
TRIM28-205ENST00000595028 SOWAHDA6NJG2 315 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 TRIM38O00635 465 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 APOL1O14791 398 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 FFAR2O15552 330 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 PSTPIP1O43586 416 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 PGLSO95336 258 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 NOP2P46087 812 aaKnown RBP15.17■□□□□ 0.02
TRIM28-205ENST00000595028 PPIDQ08752 370 aaKnown RBP15.17■□□□□ 0.02
TRIM28-205ENST00000595028 SLC10A2Q12908 348 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-205ENST00000595028 EIF2B5Q13144 721 aaKnown RBP15.17■□□□□ 0.02
TRIM28-205ENST00000595028 PTK2BQ14289 1009 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 PROX2Q3B8N5 592 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 CCDC157Q569K6 752 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 CCDC13Q8IYE1 715 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 ZNF548Q8NEK5 533 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-205ENST00000595028 OR4C6Q8NH72 309 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 MDM1Q8TC05 714 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 GOLPH3Q9H4A6 298 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 HAUS2Q9NVX0 235 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 DDX56Q9NY93 547 aaKnown RBP15.17■□□□□ 0.02
TRIM28-205ENST00000595028 AMACRQ9UHK6 382 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 TFR2Q9UP52 801 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 PCDHGA1Q9Y5H4 931 aa15.17■□□□□ 0.02
TRIM28-205ENST00000595028 KNTC1P50748 2209 aa15.16■□□□□ 0.02
TRIM28-205ENST00000595028 A0A0A6YYK5 440 aaPredicted RBP15.16■□□□□ 0.02
TRIM28-205ENST00000595028 SIGLEC6O43699 453 aa15.16■□□□□ 0.02
TRIM28-205ENST00000595028 RFPL3O75679 317 aa15.16■□□□□ 0.02
TRIM28-205ENST00000595028 RECQL5O94762 991 aaPredicted RBP15.16■□□□□ 0.02
TRIM28-205ENST00000595028 NDUFA10O95299 355 aa15.16■□□□□ 0.02
TRIM28-205ENST00000595028 PCCBP05166 539 aa15.16■□□□□ 0.02
TRIM28-205ENST00000595028 HLA-DQB2P05538 268 aa15.16■□□□□ 0.02
TRIM28-205ENST00000595028 GIMD1P0DJR0 217 aa15.16■□□□□ 0.02
TRIM28-205ENST00000595028 TNNT1P13805 278 aa15.16■□□□□ 0.02
TRIM28-205ENST00000595028 GM2AP17900 193 aa15.16■□□□□ 0.02
TRIM28-205ENST00000595028 NFKBIAP25963 317 aa15.16■□□□□ 0.02
TRIM28-205ENST00000595028 DSC2Q02487 901 aa15.16■□□□□ 0.02
TRIM28-205ENST00000595028 ZNF211Q13398 564 aaPredicted RBP15.16■□□□□ 0.02
TRIM28-205ENST00000595028 CNGA3Q16281 694 aa15.16■□□□□ 0.02
TRIM28-205ENST00000595028 C11orf63Q6NUN7 778 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms