RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 ZSWIM9Q86XI8 627 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 GAS2L3Q86XJ1 694 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 FAM181AQ8N9Y4 354 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 PCDH19Q8TAB3 1148 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.44□□□□□ -0.42
SS18-225ENST00000585121 SCG3Q8WXD2 468 aaKnown RBP12.44□□□□□ -0.42
SS18-225ENST00000585121 RFFLQ8WZ73 363 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 TBATAQ96M53 351 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 APOOQ9BUR5 198 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 POLR1EQ9GZS1 481 aaKnown RBP12.44□□□□□ -0.42
SS18-225ENST00000585121 NOD2Q9HC29 1040 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 INTUQ9ULD6 942 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 DOLKQ9UPQ8 538 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 SPEGQ15772 3267 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 TTC24A2A3L6 582 aaPredicted RBP12.43□□□□□ -0.42
SS18-225ENST00000585121 TRABD2BA6NFA1 517 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 TPP1O14773 563 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 MATN3O15232 486 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 HTRA2O43464 458 aaPredicted RBP12.43□□□□□ -0.42
SS18-225ENST00000585121 MFSD11O43934 449 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 KRT37O76014 449 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 RECQL5O94762 991 aaPredicted RBP12.43□□□□□ -0.42
SS18-225ENST00000585121 ANXA6P08133 673 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 CTSEP14091 401 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 CR2P20023 1033 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 CA4P22748 312 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 KELP23276 732 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 KDELR1P24390 212 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 CCNCP24863 283 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 MAXP61244 160 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 SEMG2Q02383 582 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 GALNT2Q10471 571 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 NFATC4Q14934 902 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 PRRT3Q5FWE3 981 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 TPRG1LQ5T0D9 272 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 ARMC12Q5T9G4 340 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 HES3Q5TGS1 186 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 ENPP7Q6UWV6 458 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 CCNYQ8ND76 341 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 APOLD1Q96LR9 279 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 ABCG4Q9H172 646 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 LUC7LQ9NQ29 371 aaKnown RBP12.43□□□□□ -0.42
SS18-225ENST00000585121 AMACRQ9UHK6 382 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 KLF15Q9UIH9 416 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 SALL4Q9UJQ4 1053 aa12.43□□□□□ -0.42
SS18-225ENST00000585121 TP53BP1Q12888 1972 aaPredicted RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 KMT2BQ9UMN6 2715 aaPredicted RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 LRRD1A4D1F6 860 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 A8MX80 341 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 CACNB4O00305 520 aaPredicted RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 PDE2AO00408 941 aaPredicted RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 MTA2O94776 668 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 RASGRP1O95267 797 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 ALPIP09923 528 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 VIPR1P32241 457 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 SLC1A1P43005 524 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 TBX2Q13207 712 aaPredicted RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 ARHGEF7Q14155 803 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 ELOCQ15369 112 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 DEFB133Q30KQ1 61 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 KDM7AQ6ZMT4 941 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 USP45Q70EL2 814 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 MARCH9Q86YJ5 346 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 CPNE8Q86YQ8 564 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 HID1Q8IV36 788 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 CACTIN-AS1Q8N1I8 211 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 PGBD5Q8N414 524 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 FSTL5Q8N475 847 aaPredicted RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 TEX26Q8N6G2 289 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 SPOCK2Q92563 424 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 FATE1Q969F0 183 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 FAF2Q96CS3 445 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 WDR92Q96MX6 357 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 TSGA13Q96PP4 275 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 RNF157Q96PX1 679 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 SEMA3CQ99985 751 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 RBM22Q9NW64 420 aaKnown RBP eCLIP12.42□□□□□ -0.423e-7■■■■■ 29.6
SS18-225ENST00000585121 B4GALT6Q9UBX8 382 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 KLQ9UEF7 1012 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 TTLL3Q9Y4R7 772 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 OR1A2Q9Y585 309 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 RAI2Q9Y5P3 530 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 ARID1BQ8NFD5 2236 aaPredicted RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 SRRM3A6NNA2 597 aaPredicted RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 ZNF487B1APH4 448 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 LMO7DNF2Z398 122 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 SPOPO43791 374 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 PGLSO95336 258 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 TNFP01375 233 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 GP1BAP07359 652 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 GIMD1P0DJR0 217 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 CCNB1P14635 433 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 ZFXP17010 805 aaPredicted RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 MAGEA1P43355 309 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 HK3P52790 923 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 EPHB1P54762 984 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 SRP54P61011 504 aaKnown RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 TRAF2Q12933 501 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 RALGDSQ12967 914 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 TARDBPQ13148 414 aaKnown RBP eCLIP12.42□□□□□ -0.422e-8■■□□□ 13.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms