RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 C1SP09871 688 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 ZNF28P17035 718 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 MCM7P33993 719 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 KRT2P35908 639 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 CPOXP36551 454 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 LIG4P49917 911 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 MVDP53602 400 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 MFAP4P55083 255 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 ABHD18Q0P651 414 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 KCNJ12Q14500 433 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 USP10Q14694 798 aaKnown RBP5.98□□□□□ -1.45
VPS53-219ENST00000576019 AASDHQ4L235 1098 aaPredicted RBP5.98□□□□□ -1.45
VPS53-219ENST00000576019 SETMARQ53H47 684 aaPredicted RBP5.98□□□□□ -1.45
VPS53-219ENST00000576019 MPP7Q5T2T1 576 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 KIAA0930Q6ICG6 404 aaPredicted RBP5.98□□□□□ -1.45
VPS53-219ENST00000576019 GALNT17Q6IS24 598 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 GRHL2Q6ISB3 625 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 EFCAB12Q6NXP0 572 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 C11orf88Q6PI97 169 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 SARM1Q6SZW1 724 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 MAMDC4Q6UXC1 1216 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 SERPINA13PQ6UXR4 307 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.98□□□□□ -1.45
VPS53-219ENST00000576019 CHST3Q7LGC8 479 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 PRRT2Q7Z6L0 340 aaPredicted RBP5.98□□□□□ -1.45
VPS53-219ENST00000576019 P3H2Q8IVL5 708 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 ARHGAP12Q8IWW6 846 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 REXO1L1PQ8IX06 675 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 ABRAQ8N0Z2 381 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 LINC00482Q8N8I6 264 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 UTP15Q8TED0 518 aaKnown RBP5.98□□□□□ -1.45
VPS53-219ENST00000576019 DUSP19Q8WTR2 217 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 SRSF8Q9BRL6 282 aaKnown RBP5.98□□□□□ -1.45
VPS53-219ENST00000576019 UTP14AQ9BVJ6 771 aaKnown RBP5.98□□□□□ -1.45
VPS53-219ENST00000576019 MBNL3Q9NUK0 354 aaKnown RBP5.98□□□□□ -1.45
VPS53-219ENST00000576019 ADPRHL2Q9NX46 363 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 CTTNBP2NLQ9P2B4 639 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 HSPB7Q9UBY9 170 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 TBK1Q9UHD2 729 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 MOSPD1Q9UJG1 213 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 PADI1Q9ULC6 663 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 MAFFQ9ULX9 164 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 SSX2IPQ9Y2D8 614 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 MTF2Q9Y483 593 aaPredicted RBP5.98□□□□□ -1.45
VPS53-219ENST00000576019 SESN1Q9Y6P5 492 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 CREBBPQ92793 2442 aa5.98□□□□□ -1.45
VPS53-219ENST00000576019 PTPRFP10586 1907 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 AKAP13Q12802 2813 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 NPIPB13A6NJU9 1138 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 TRIM64CA6NLI5 447 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 DRGXA6NNA5 263 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 NPIPB5A8MRT5 1133 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 NPIPB4C9JG80 1138 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 J3QKU1 62 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 TRIM24O15164 1050 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 LIASO43766 372 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 TACC1O75410 805 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 SEC31AO94979 1220 aaKnown RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 RNASE1P07998 156 aaKnown RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 SNRNP70P08621 437 aaKnown RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 H2AFB1P0C5Y9 115 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 H2AFB2P0C5Z0 115 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 FDPSP14324 419 aaKnown RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 PTAFRP25105 342 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 CXCR5P32302 372 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 BMPR1AP36894 532 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 IRAK1P51617 712 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 CLCN5P51795 746 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 POLGP54098 1239 aaPredicted RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 FOXL2P58012 376 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 TIRAPP58753 221 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 IL1RL1Q01638 556 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 YWHAHQ04917 246 aaPredicted RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 AP5B1Q2VPB7 878 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 DPCR1Q3MIW9 517 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 DCAF17Q5H9S7 520 aaPredicted RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 RBM20Q5T481 1227 aaKnown RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 ZNF648Q5T619 568 aaPredicted RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 SLC9A4Q6AI14 798 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 NAPEPLDQ6IQ20 393 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 FAM111BQ6SJ93 734 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 CLEC17AQ6ZS10 378 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 MCM10Q7L590 875 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 SLC46A3Q7Z3Q1 461 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 ZNF483Q8TF39 744 aaPredicted RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 OSCP1Q8WVF1 389 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 RAB40AQ8WXH6 277 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 ST8SIA2Q92186 375 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 FAM149B1Q96BN6 582 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 TRMT61AQ96FX7 289 aaKnown RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 FAM84AQ96KN4 292 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 RAB3IPQ96QF0 476 aaPredicted RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 TMEM39BQ9GZU3 492 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 DEF6Q9H4E7 631 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 CLMPQ9H6B4 373 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 FBRSL1Q9HCM7 1045 aaKnown RBP5.97□□□□□ -1.45
VPS53-219ENST00000576019 IL1RAPL1Q9NZN1 696 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 SH3BP4Q9P0V3 963 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 EPS15L1Q9UBC2 864 aa5.97□□□□□ -1.45
VPS53-219ENST00000576019 HSFX1Q9UBD0 423 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms