RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 WBP1Q96G27 269 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 LIN37Q96GY3 246 aaPredicted RBP6.77□□□□□ -1.33
VPS53-213ENST00000572334 CELF6Q96J87 481 aaKnown RBP6.77□□□□□ -1.33
VPS53-213ENST00000572334 KCTD15Q96SI1 283 aaPredicted RBP6.77□□□□□ -1.33
VPS53-213ENST00000572334 CNPY3Q9BT09 278 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 APOOQ9BUR5 198 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 DPH1Q9BZG8 443 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 EDEM3Q9BZQ6 932 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 ABCG4Q9H172 646 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 FGF22Q9HCT0 170 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 NCKIPSDQ9NZQ3 722 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 UBA2Q9UBT2 640 aaPredicted RBP6.77□□□□□ -1.33
VPS53-213ENST00000572334 PADI4Q9UM07 663 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 OR1A2Q9Y585 309 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 RELNP78509 3460 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 NBASA2RRP1 2371 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 NAV2Q8IVL1 2488 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 CCDC187A0A096LP49 1063 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 TTC24A2A3L6 582 aaPredicted RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 EIF4E1BA6NMX2 242 aaKnown RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 D6RAR5 112 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 K7ENP7 123 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 FGF10O15520 208 aaPredicted RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 PEX11BO96011 259 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 ANXA6P08133 673 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 HGFP14210 728 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 TCF4P15884 667 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 TRIM23P36406 574 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 PAPOLAP51003 745 aaKnown RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 SUOXP51687 545 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 NDST2P52849 883 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 SRP54P61011 504 aaKnown RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 RAD51Q06609 339 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 VAC14Q08AM6 782 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 ELP6Q0PNE2 266 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 MTM1Q13496 603 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 LY6DQ14210 128 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 FKBP15Q5T1M5 1219 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 DNAJC24Q6P3W2 148 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 INO80CQ6PI98 192 aaPredicted RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 OGFOD3Q6PK18 319 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 LVRNQ6Q4G3 990 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 ENPP7Q6UWV6 458 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 LIPIQ6XZB0 460 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 SRLQ86TD4 932 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 ZNF354CQ86Y25 554 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 HID1Q8IV36 788 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 CBARPQ8N350 705 aaPredicted RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 SDR16C5Q8N3Y7 309 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 FSTL5Q8N475 847 aaPredicted RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 GOLGA6L1Q8N7Z2 621 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 ARL10Q8N8L6 244 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 NEK11Q8NG66 645 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 CCL4L1Q8NHW4 92 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 WDR36Q8NI36 951 aaKnown RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 PTCD2Q8WV60 388 aaKnown RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 OR1E3Q8WZA6 343 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 NAT6Q93015 286 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 CCDC74AQ96AQ1 378 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 ZNF641Q96N77 438 aaPredicted RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 RBM15Q96T37 977 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS53-213ENST00000572334 SNRNP25Q9BV90 132 aaKnown RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 LGR4Q9BXB1 951 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 FOXP3Q9BZS1 431 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 SLC13A1Q9BZW2 595 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 CATSPERBQ9H7T0 1116 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 MRPL40Q9NQ50 206 aaKnown RBP6.76□□□□□ -1.33
VPS53-213ENST00000572334 THSD1Q9NS62 852 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 EVA1BQ9NVM1 165 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 SIRPGQ9P1W8 387 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 GULP1Q9UBP9 304 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 METRNQ9UJH8 293 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 AP4E1Q9UPM8 1137 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 ATP8A1Q9Y2Q0 1164 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 ST14Q9Y5Y6 855 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 DGKBQ9Y6T7 804 aa6.76□□□□□ -1.33
VPS53-213ENST00000572334 DOPEY2Q9Y3R5 2298 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 ZNF106Q9H2Y7 1883 aaKnown RBP6.75□□□□□ -1.33
VPS53-213ENST00000572334 CFAP69A5D8W1 941 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 TMEM191CA6NGB0 347 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 CYSRT1A8MQ03 144 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 TMEM110-MUSTN1A8MSY1 372 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 RECQL5O94762 991 aaPredicted RBP6.75□□□□□ -1.33
VPS53-213ENST00000572334 TNFSF15O95150 251 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 RASGRP1O95267 797 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 PCCBP05166 539 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 ITGA2BP08514 1039 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 HOXC4P09017 264 aaPredicted RBP6.75□□□□□ -1.33
VPS53-213ENST00000572334 KRT10P13645 584 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 ERCC2P18074 760 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 CR2P20023 1033 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 IL1R2P27930 398 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 MIPP30301 263 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 CCKBRP32239 447 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 HTR7P34969 479 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 UGT1A5P35504 534 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 ETV5P41161 510 aa6.75□□□□□ -1.33
VPS53-213ENST00000572334 MLLT3P42568 568 aaPredicted RBP6.75□□□□□ -1.33
VPS53-213ENST00000572334 TNNT3P45378 269 aaPredicted RBP6.75□□□□□ -1.33
VPS53-213ENST00000572334 RPIAP49247 311 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms