RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 C1orf131Q8NDD1 294 aaKnown RBP16.28■□□□□ 0.2
CLK3-223ENST00000568488 ZDHHC1Q8WTX9 485 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 FUBP1Q96AE4 644 aaKnown RBP16.28■□□□□ 0.2
CLK3-223ENST00000568488 HMCESQ96FZ2 354 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 SPATA32Q96LK8 384 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 GDAP1L1Q96MZ0 367 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 CTRCQ99895 268 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 INTS2Q9H0H0 1204 aaKnown RBP16.28■□□□□ 0.2
CLK3-223ENST00000568488 NDFIP2Q9NV92 336 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 LRP4O75096 1905 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 BUB1O43683 1085 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 ZNF202O95125 648 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 ECEL1O95672 775 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 IGSF6O95976 241 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 KELP23276 732 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 RAB15P59190 212 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 PNOCQ13519 176 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 ARTNQ5T4W7 220 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 RWDD4Q6NW29 188 aaKnown RBP16.27■□□□□ 0.2
CLK3-223ENST00000568488 CCDC13Q8IYE1 715 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 GALNT11Q8NCW6 608 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 ZNF397Q8NF99 534 aaPredicted RBP16.27■□□□□ 0.2
CLK3-223ENST00000568488 OR4D9Q8NGE8 314 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 PHF12Q96QT6 1004 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 NCAPGQ9BPX3 1015 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 TTYH3Q9C0H2 523 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 DKK3Q9UBP4 350 aa16.27■□□□□ 0.2
CLK3-223ENST00000568488 FAM237AA0A1B0GTK4 181 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 B4E171 279 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 FGF1P05230 155 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 TSPAN7P41732 249 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 PTPN20Q4JDL3 420 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 TCTN3Q6NUS6 607 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 GJB7Q6PEY0 223 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 TIPARPQ7Z3E1 657 aaKnown RBP16.26■□□□□ 0.19
CLK3-223ENST00000568488 ZNF438Q7Z4V0 828 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 FAM131BQ86XD5 332 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 FAM114A1Q8IWE2 563 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 CPT1CQ8TCG5 803 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 PGAP3Q96FM1 320 aaPredicted RBP16.26■□□□□ 0.19
CLK3-223ENST00000568488 CCDC34Q96HJ3 373 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 TEFMQ96QE5 360 aaKnown RBP16.26■□□□□ 0.19
CLK3-223ENST00000568488 PCDH12Q9NPG4 1184 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 TMEM9Q9P0T7 183 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 KCTD3Q9Y597 815 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 KCNMB2Q9Y691 235 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 LRBAP50851 2863 aa16.26■□□□□ 0.19
CLK3-223ENST00000568488 CELSR2Q9HCU4 2923 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 CXorf51AA0A1B0GTR3 108 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 FAM170AA1A519 330 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 A8MU76 341 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 INSIG1O15503 277 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 KRT38O76015 456 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 TMCC1O94876 653 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 THRAP10827 490 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 CCNB1P14635 433 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 DCTP40126 519 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 NOP2P46087 812 aaKnown RBP16.25■□□□□ 0.19
CLK3-223ENST00000568488 GPR3P46089 330 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 SUOXP51687 545 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 KIAA1024LP59773 190 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 RHOAP61586 193 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 ABHD18Q0P651 414 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 PKP1Q13835 747 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 UGP2Q16851 508 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 SLC25A52Q3SY17 297 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 SNAP47Q5SQN1 464 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 CFAP58Q5T655 872 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 ERAP2Q6P179 960 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 PATE1Q8WXA2 126 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 NT5C3BQ969T7 300 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 RTP4Q96DX8 246 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 CEP63Q96MT8 703 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 CARS2Q9HA77 564 aaKnown RBP16.25■□□□□ 0.19
CLK3-223ENST00000568488 CASS4Q9NQ75 786 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 CUEDC1Q9NWM3 386 aaPredicted RBP16.25■□□□□ 0.19
CLK3-223ENST00000568488 PPARGC1AQ9UBK2 798 aaKnown RBP16.25■□□□□ 0.19
CLK3-223ENST00000568488 PCDHB3Q9Y5E6 796 aa16.25■□□□□ 0.19
CLK3-223ENST00000568488 MRPS18BQ9Y676 258 aaKnown RBP16.25■□□□□ 0.19
CLK3-223ENST00000568488 DOCK4Q8N1I0 1966 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 ABCA12Q86UK0 2595 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 TNFRSF10CO14798 259 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 TEX33O43247 280 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 PIGNO95427 931 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 KRT9P35527 623 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 STAT1P42224 750 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 NR1D2Q14995 579 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 TSR1Q2NL82 804 aaKnown RBP16.24■□□□□ 0.19
CLK3-223ENST00000568488 COBLL1Q53SF7 1204 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 ENOSF1Q7L5Y1 443 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 C17orf82Q86X59 251 aaPredicted RBP16.24■□□□□ 0.19
CLK3-223ENST00000568488 ZDHHC17Q8IUH5 632 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 SRRM1Q8IYB3 904 aaKnown RBP16.24■□□□□ 0.19
CLK3-223ENST00000568488 EXOC2Q96KP1 924 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 LGR4Q9BXB1 951 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 GSDMCQ9BYG8 508 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 SPRY4Q9C004 299 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 MAGEH1Q9H213 219 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 GOLPH3LQ9H4A5 285 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 PLCB1Q9NQ66 1216 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms