RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 TTC23LQ6PF05 361 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 OTOAQ7RTW8 1153 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 TP53INP2Q8IXH6 220 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 CMTM8Q8IZV2 173 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 AHI1Q8N157 1196 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 CBARPQ8N350 705 aaPredicted RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 MICALL1Q8N3F8 863 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 CCDC33Q8N5R6 958 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 CELF5Q8N6W0 485 aaKnown RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 PAF1Q8N7H5 531 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS39-204ENST00000561818 ARL14EPQ8N8R7 260 aaPredicted RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 OR6P1Q8NGX9 317 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 OR4L1Q8NH43 312 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 MICAL1Q8TDZ2 1067 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 POF1BQ8WVV4 589 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 ULK4Q96C45 1275 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 VWCEQ96DN2 955 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 MYO19Q96H55 970 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 ELMO2Q96JJ3 720 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 FCRL3Q96P31 734 aaPredicted RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 TRIB3Q96RU7 358 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 CPEB1Q9BZB8 566 aaKnown RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 ILKAPQ9H0C8 392 aaPredicted RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 SFXN1Q9H9B4 322 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 TDP1Q9NUW8 608 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS39-204ENST00000561818 DNAJC28Q9NX36 388 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 KCTD5Q9NXV2 234 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 UBP1Q9NZI7 540 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 CFAP97Q9P2B7 532 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 SLC17A7Q9P2U7 560 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 DNMT3BQ9UBC3 853 aaKnown RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 HCSTQ9UBK5 93 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 LNPEPQ9UIQ6 1025 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 ZFP69BQ9UJL9 534 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 HAO1Q9UJM8 370 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 SLC39A10Q9ULF5 831 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 SHROOM3Q8TF72 1996 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 HMX2A2RU54 273 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 C2orf78A6NCI8 922 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.54□□□□□ -1.2
VPS39-204ENST00000561818 LEFTY2O00292 366 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 NPC1O15118 1278 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 KPNA5O15131 536 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 CD3EAPO15446 510 aaKnown RBP7.54□□□□□ -1.2
VPS39-204ENST00000561818 LDB2O43679 373 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 SMIM24O75264 130 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 VPS26AO75436 327 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 NDUFS3O75489 264 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 ZMPSTE24O75844 475 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 HAUS5O94927 633 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 NFATC1O95644 943 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 POP4O95707 220 aaKnown RBP7.54□□□□□ -1.2
VPS39-204ENST00000561818 AHSGP02765 367 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 KLKB1P03952 638 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 SERPINA6P08185 405 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 SRPRAP08240 638 aaKnown RBP7.54□□□□□ -1.2
VPS39-204ENST00000561818 TPBGLP0DKB5 382 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 IRF1P10914 325 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 ZNF7P17097 686 aaPredicted RBP7.54□□□□□ -1.2
VPS39-204ENST00000561818 ITGALP20701 1170 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 PRDX6P30041 224 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 FOXN2P32314 431 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 SCTRP47872 440 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 SLC1A6P48664 564 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 RGS4P49798 205 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 ZNF140P52738 457 aaPredicted RBP7.54□□□□□ -1.2
VPS39-204ENST00000561818 ABCE1P61221 599 aaKnown RBP7.54□□□□□ -1.2
VPS39-204ENST00000561818 SATB1Q01826 763 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 CACNG1Q06432 222 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 BNIP1Q12981 228 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 MTM1Q13496 603 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 PLEKHG6Q3KR16 790 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 TTLL9Q3SXZ7 439 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 GALNTL6Q49A17 601 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 DNAL1Q4LDG9 190 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 GPR158Q5T848 1215 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 MBLAC2Q68D91 279 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 GRAMD4Q6IC98 578 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 ESRP1Q6NXG1 681 aaKnown RBP7.54□□□□□ -1.2
VPS39-204ENST00000561818 RFWD3Q6PCD5 774 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 NCEH1Q6PIU2 408 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 BRAT1Q6PJG6 821 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 TXNDC11Q6PKC3 985 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 FAM47EQ6ZV65 393 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 ACAD11Q709F0 780 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 GAREM2Q75VX8 874 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 TMEM150AQ86TG1 271 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 DNAJC5GQ8N7S2 189 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 OR7D4Q8NG98 312 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 OR2AP1Q8NGE2 309 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 OR13J1Q8NGT2 312 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 SPPL3Q8TCT6 385 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 BLOC1S5Q8TDH9 187 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 C10orf82Q8WW14 230 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 KCNJ9Q92806 393 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 BADQ92934 168 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 KLHL29Q96CT2 875 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 CMTM5Q96DZ9 223 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms