RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 SRP54P61011 504 aaKnown RBP11.71□□□□□ -0.53
USP3-220ENST00000561381 RALGDSQ12967 914 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 CFAP58Q5T655 872 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 ERMARDQ5T6L9 678 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 AFMIDQ63HM1 303 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 E4F1Q66K89 784 aaPredicted RBP11.71□□□□□ -0.53
USP3-220ENST00000561381 PLEKHA7Q6IQ23 1121 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 ESRP1Q6NXG1 681 aaKnown RBP11.71□□□□□ -0.53
USP3-220ENST00000561381 ERAP2Q6P179 960 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 BRAT1Q6PJG6 821 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 RFX8Q6ZV50 586 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 B3GNT8Q7Z7M8 397 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 SRLQ86TD4 932 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 SFTPA2Q8IWL1 248 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 PELI3Q8N2H9 469 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 FSTL5Q8N475 847 aaPredicted RBP11.71□□□□□ -0.53
USP3-220ENST00000561381 ARL10Q8N8L6 244 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 FUBP1Q96AE4 644 aaKnown RBP11.71□□□□□ -0.53
USP3-220ENST00000561381 CCDC74AQ96AQ1 378 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 PDXPQ96GD0 296 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 TUBGCP5Q96RT8 1024 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 EDEM3Q9BZQ6 932 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 PARVAQ9NVD7 372 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 KLQ9UEF7 1012 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 GPR34Q9UPC5 381 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 TTC24A2A3L6 582 aaPredicted RBP11.7□□□□□ -0.54
USP3-220ENST00000561381 TMEM191CA6NGB0 347 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 LRRC53A6NM62 1247 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 TMEM110-MUSTN1A8MSY1 372 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 A8MX80 341 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 CDRT15L2A8MXV6 281 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 NTN3O00634 580 aaPredicted RBP11.7□□□□□ -0.54
USP3-220ENST00000561381 RECQL5O94762 991 aaPredicted RBP11.7□□□□□ -0.54
USP3-220ENST00000561381 TNFSF15O95150 251 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 CCDC172P0C7W6 258 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 GM2AP17900 193 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 HTR1BP28222 390 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 MIPP30301 263 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 HTR7P34969 479 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 BLKP51451 505 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 TMPRSS3P57727 454 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 CCL7P80098 99 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 SKOR1P84550 965 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 TYRO3Q06418 890 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 SPIDRQ14159 915 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 GRM3Q14832 879 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 ELOCQ15369 112 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 PPP6R3Q5H9R7 873 aaPredicted RBP11.7□□□□□ -0.54
USP3-220ENST00000561381 BROXQ5VW32 411 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 IGF2-ASQ6U949 168 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 ZNF571Q7Z3V5 609 aaPredicted RBP11.7□□□□□ -0.54
USP3-220ENST00000561381 SDR16C5Q8N3Y7 309 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 ZNF843Q8N446 348 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 OR1E3Q8WZA6 343 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 GRAMD1AQ96CP6 724 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 ECHDC3Q96DC8 303 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 CINPQ9BW66 212 aaPredicted RBP11.7□□□□□ -0.54
USP3-220ENST00000561381 FOXP3Q9BZS1 431 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 ATP13A3Q9H7F0 1226 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 SP110Q9HB58 689 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 MRPL40Q9NQ50 206 aaKnown RBP11.7□□□□□ -0.54
USP3-220ENST00000561381 PCDHGA8Q9Y5G5 932 aa11.7□□□□□ -0.54
USP3-220ENST00000561381 A0A1W2PQM1 296 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 TMEM202A6NGA9 273 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 AGRPO00253 132 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 DDX3XO00571 662 aaKnown RBP eCLIP11.69□□□□□ -0.54
USP3-220ENST00000561381 TRAFD1O14545 582 aaPredicted RBP11.69□□□□□ -0.54
USP3-220ENST00000561381 DAPK3O43293 454 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 TNFP01375 233 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 FTLP02792 175 aaPredicted RBP11.69□□□□□ -0.54
USP3-220ENST00000561381 ALPIP09923 528 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 DESP17661 470 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 SERPINA4P29622 427 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 CSNK1DP48730 415 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 SCNN1BP51168 640 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 BCL2L1Q07817 233 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 MTM1Q13496 603 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 DPYSQ14117 519 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 AGERQ15109 404 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 CCDC183Q5T5S1 534 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 LVRNQ6Q4G3 990 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 LIPIQ6XZB0 460 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 GKN2Q86XP6 184 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 LSM14AQ8ND56 463 aaKnown RBP11.69□□□□□ -0.54
USP3-220ENST00000561381 WDR36Q8NI36 951 aaKnown RBP11.69□□□□□ -0.54
USP3-220ENST00000561381 SCG3Q8WXD2 468 aaKnown RBP11.69□□□□□ -0.54
USP3-220ENST00000561381 WDR92Q96MX6 357 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 GBP4Q96PP9 640 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 LGR4Q9BXB1 951 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 DPH1Q9BZG8 443 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 HAUS4Q9H6D7 363 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 FGF22Q9HCT0 170 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 DONSONQ9NYP3 566 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 CWC15Q9P013 229 aaKnown RBP11.69□□□□□ -0.54
USP3-220ENST00000561381 CNOT8Q9UFF9 292 aaKnown RBP11.69□□□□□ -0.54
USP3-220ENST00000561381 UNC13CQ8NB66 2214 aa11.69□□□□□ -0.54
USP3-220ENST00000561381 CCDC187A0A096LP49 1063 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 EIF3CLB5ME19 914 aaKnown RBP11.68□□□□□ -0.54
USP3-220ENST00000561381 ERVH48-1M5A8F1 160 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 PRPSAP2O60256 369 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms