RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 GOLGA6DP0CG33 693 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 RENBPP51606 427 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 RP1P56715 2156 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 NSUN2Q08J23 767 aaKnown RBP eCLIP12.58□□□□□ -0.4
SMAD3-208ENST00000558827 SLC10A2Q12908 348 aaPredicted RBP12.58□□□□□ -0.4
SMAD3-208ENST00000558827 LIPIQ6XZB0 460 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 RFLNAQ6ZTI6 216 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 PQLC3Q8N755 202 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 HCAR2Q8TDS4 363 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 ECHDC3Q96DC8 303 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 ZNF599Q96NL3 588 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 NUDCD1Q96RS6 583 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 SEMA3CQ99985 751 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 GOLGA6AQ9NYA3 693 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 SIRPGQ9P1W8 387 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 GULP1Q9UBP9 304 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 APOBEC3BQ9UH17 382 aaKnown RBP12.58□□□□□ -0.4
SMAD3-208ENST00000558827 MOSPD1Q9UJG1 213 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 RAXQ9Y2V3 346 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 ZFYVE26Q68DK2 2539 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 DSPP15924 2871 aaKnown RBP12.58□□□□□ -0.4
SMAD3-208ENST00000558827 COL5A1P20908 1838 aaPredicted RBP12.58□□□□□ -0.4
SMAD3-208ENST00000558827 LY6G6EA0A0G2JKS1 128 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 LRRD1A4D1F6 860 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 NEMP2A6NFY4 417 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 H3BM21 787 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 CPP00450 1065 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 CAPNS1P04632 268 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 PDHA1P08559 390 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 ALPIP09923 528 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 ALPPL2P10696 532 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 TSHRP16473 764 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 GM2AP17900 193 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 CR2P20023 1033 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 KDELR1P24390 212 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 SERPINB6P35237 376 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 AP1S1P61966 158 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 INSM1Q01101 510 aaPredicted RBP12.57□□□□□ -0.4
SMAD3-208ENST00000558827 DSC2Q02487 901 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 PPARDQ03181 441 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 TBX2Q13207 712 aaPredicted RBP12.57□□□□□ -0.4
SMAD3-208ENST00000558827 CAMK2BQ13554 666 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 PTK2BQ14289 1009 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 IHHQ14623 411 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 ALG11Q2TAA5 492 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 NPNTQ6UXI9 565 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 DPPA4Q7L190 304 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 TSPAN33Q86UF1 283 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 BBS5Q8N3I7 341 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 CCNYQ8ND76 341 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 FAM174AQ8TBP5 190 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 FAM71BQ8TC56 605 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 RNF25Q96BH1 459 aaPredicted RBP12.57□□□□□ -0.4
SMAD3-208ENST00000558827 IL12RB2Q99665 862 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 LRRC61Q9BV99 259 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 CEP41Q9BYV8 373 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 SLC13A1Q9BZW2 595 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 CLPBQ9H078 707 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 RBSNQ9H1K0 784 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 GOLPH3Q9H4A6 298 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 SYNDIG1Q9H7V2 258 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 MRPL40Q9NQ50 206 aaKnown RBP12.57□□□□□ -0.4
SMAD3-208ENST00000558827 RBM22Q9NW64 420 aaKnown RBP eCLIP12.57□□□□□ -0.4
SMAD3-208ENST00000558827 NLGN3Q9NZ94 848 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 SPASTQ9UBP0 616 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 PCDHGA1Q9Y5H4 931 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 HEY1Q9Y5J3 304 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 RAI2Q9Y5P3 530 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 U3KQA8 63 aa12.57□□□□□ -0.4
SMAD3-208ENST00000558827 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.56□□□□□ -0.4
SMAD3-208ENST00000558827 TMEM8BA6NDV4 472 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 TMEM202A6NGA9 273 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 YY2O15391 372 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 MT-CO3P00414 261 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 KRT1P04264 644 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 ANXA6P08133 673 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 KRT7P08729 469 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 CTSEP14091 401 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 ACP1P24666 158 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 GARSP41250 739 aaKnown RBP12.56□□□□□ -0.4
SMAD3-208ENST00000558827 NOP2P46087 812 aaKnown RBP12.56□□□□□ -0.4
SMAD3-208ENST00000558827 SUOXP51687 545 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 YPEL5P62699 121 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 POLR2LP62875 67 aaKnown RBP12.56□□□□□ -0.4
SMAD3-208ENST00000558827 DYNLT1P63172 113 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 GALNT2Q10471 571 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 NFATC4Q14934 902 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 PAFAH1B3Q15102 231 aaKnown RBP12.56□□□□□ -0.4
SMAD3-208ENST00000558827 PDK2Q15119 407 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 CNGA3Q16281 694 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 GUSBP11Q6P575 273 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 MACC1Q6ZN28 852 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 EFL1Q7Z2Z2 1120 aaKnown RBP12.56□□□□□ -0.4
SMAD3-208ENST00000558827 HSD11B1LQ7Z5J1 315 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 ZSCAN30Q86W11 494 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 TMPRSS12Q86WS5 348 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 RFX6Q8HWS3 928 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 SFTPA2Q8IWL1 248 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 IFI44Q8TCB0 444 aa12.56□□□□□ -0.4
SMAD3-208ENST00000558827 HNRNPLLQ8WVV9 542 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms