RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PNPLA3Q9NST1 481 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 RBPJLQ9UBG7 517 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 ADAM28Q9UKQ2 775 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 STAP1Q9ULZ2 295 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 CORINQ9Y5Q5 1042 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 A0A0U1RQS6 177 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 CPB1P15086 417 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 CAPN3P20807 821 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 POLR2IP36954 125 aaKnown RBP12.39□□□□□ -0.43
LDLR-205ENST00000557933 ARHGAP1Q07960 439 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 TTLL4Q14679 1199 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 POLD3Q15054 466 aaPredicted RBP12.39□□□□□ -0.43
LDLR-205ENST00000557933 GRIK4Q16099 956 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 CYP51A1Q16850 503 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 PATL1Q86TB9 770 aaKnown RBP12.39□□□□□ -0.43
LDLR-205ENST00000557933 ZNF554Q86TJ5 538 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 SETD3Q86TU7 594 aaPredicted RBP12.39□□□□□ -0.43
LDLR-205ENST00000557933 ZC3H7AQ8IWR0 971 aaKnown RBP12.39□□□□□ -0.43
LDLR-205ENST00000557933 CMTR2Q8IYT2 770 aaKnown RBP12.39□□□□□ -0.43
LDLR-205ENST00000557933 HDAC11Q96DB2 347 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 SNX27Q96L92 541 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 IL22Q9GZX6 179 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.39□□□□□ -0.43
LDLR-205ENST00000557933 FBXO5Q9UKT4 447 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 UNC80Q8N2C7 3258 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 A0A0J9YYE9 177 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 ZBTB11O95625 1053 aaPredicted RBP12.38□□□□□ -0.43
LDLR-205ENST00000557933 NPR3P17342 541 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 UGT1A1P22309 533 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 UGT1A4P22310 534 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 UGT1A3P35503 534 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 UGT1A5P35504 534 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 PRAMEF19Q5SWL8 479 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 C16orf87Q6PH81 154 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 ERI1Q8IV48 349 aaKnown RBP12.38□□□□□ -0.43
LDLR-205ENST00000557933 SCAMP5Q8TAC9 235 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 DLG3Q92796 817 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 TEX37Q96LM6 180 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 TEKT5Q96M29 485 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 TIMMDC1Q9NPL8 285 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 C1orf232A0A0U1RR37 186 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 K7EPI3 171 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 CLOCKO15516 846 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 CNMDO75829 334 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 PARNO95453 639 aaKnown RBP12.38□□□□□ -0.43
LDLR-205ENST00000557933 RAB39AQ14964 217 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 PAFAH1B3Q15102 231 aaKnown RBP12.38□□□□□ -0.43
LDLR-205ENST00000557933 CARTPTQ16568 116 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 MARCH8Q5T0T0 291 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 TMEM207Q6UWW9 146 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 MAMDC4Q6UXC1 1216 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 RALGPS2Q86X27 583 aaPredicted RBP12.38□□□□□ -0.43
LDLR-205ENST00000557933 CPSF7Q8N684 471 aaKnown RBP12.38□□□□□ -0.43
LDLR-205ENST00000557933 OR10Q1Q8NGQ4 319 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 DNAJB3Q8WWF6 145 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 LPPQ93052 612 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 COLEC11Q9BWP8 271 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 AKTIPQ9H8T0 292 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 RRAGCQ9HB90 399 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 MARCH4Q9P2E8 410 aaPredicted RBP12.38□□□□□ -0.43
LDLR-205ENST00000557933 AASSQ9UDR5 926 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 TRAF6Q9Y4K3 522 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 SIP14410 1827 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 DHRS12A0PJE2 317 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 ERI2A8K979 691 aaKnown RBP12.38□□□□□ -0.43
LDLR-205ENST00000557933 H3BMQ9 156 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 TRIM24O15164 1050 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 GAS2O43903 313 aaKnown RBP12.38□□□□□ -0.43
LDLR-205ENST00000557933 ALDH4A1P30038 563 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 ARSDP51689 593 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 LILRA4P59901 499 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 PFKFB4Q16877 469 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 SLC44A4Q53GD3 710 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 PERM1Q5SV97 790 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 TBPL2Q6SJ96 375 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 LYSMD3Q7Z3D4 306 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 HS3ST5Q8IZT8 346 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 PELI3Q8N2H9 469 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 COG8Q96MW5 612 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 SMIM14Q96QK8 99 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 CYP2S1Q96SQ9 504 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 TBL1YQ9BQ87 522 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 UPF3AQ9H1J1 476 aaKnown RBP12.38□□□□□ -0.43
LDLR-205ENST00000557933 CRTAC1Q9NQ79 661 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 TRNAU1APQ9NX07 287 aaKnown RBP12.38□□□□□ -0.43
LDLR-205ENST00000557933 BCAP29Q9UHQ4 241 aa12.38□□□□□ -0.43
LDLR-205ENST00000557933 NUP214P35658 2090 aaPredicted RBP12.37□□□□□ -0.43
LDLR-205ENST00000557933 SETSIPP0DME0 302 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 GGT5P36269 586 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 ALDH3B2P48448 385 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 CD151P48509 253 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 CDKN2DP55273 166 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 LSM3P62310 102 aaKnown RBP12.37□□□□□ -0.43
LDLR-205ENST00000557933 ESRRGP62508 458 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 TXNL4AP83876 142 aaKnown RBP12.37□□□□□ -0.43
LDLR-205ENST00000557933 STX5Q13190 355 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 NEPROQ6NW34 567 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 PKN3Q6P5Z2 889 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 KCTD8Q6ZWB6 473 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 PIWIL3Q7Z3Z3 882 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms