RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 HNRNPLP14866 589 aaKnown RBP eCLIP16.37■□□□□ 0.21
SHMT2-232ENST00000557487 IMPDH1P20839 514 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 ADRA1AP35348 466 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 NDST2P52849 883 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 MAP3K7CLP57077 242 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 FOXM1Q08050 763 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 COQ5Q5HYK3 327 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 BTBD8Q5XKL5 378 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 DENND5AQ6IQ26 1287 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 NEPROQ6NW34 567 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 ESRP1Q6NXG1 681 aaKnown RBP16.37■□□□□ 0.21
SHMT2-232ENST00000557487 LARP4Q71RC2 724 aaKnown RBP eCLIP16.37■□□□□ 0.217e-8■■□□□ 12.3
SHMT2-232ENST00000557487 IFNL1Q8IU54 200 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 LRRC49Q8IUZ0 686 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 FAM47BQ8NA70 645 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 GTF3C2Q8WUA4 911 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-232ENST00000557487 L3HYPDHQ96EM0 354 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 FEM1CQ96JP0 617 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 HIPK3Q9H422 1215 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 UBP1Q9NZI7 540 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 MCM3APO60318 1980 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 I6L893 689 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-232ENST00000557487 CLDN5O00501 218 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 TNPO2O14787 897 aaKnown RBP16.37■□□□□ 0.21
SHMT2-232ENST00000557487 AKAP10O43572 662 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 SFSWAPQ12872 951 aaKnown RBP16.37■□□□□ 0.21
SHMT2-232ENST00000557487 ZNF460Q14592 562 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 POU6F1Q14863 301 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 ZNF470Q6ECI4 717 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 LCN8Q6JVE9 175 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 TIGD7Q6NT04 549 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-232ENST00000557487 KLHL35Q6PF15 583 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 TTC33Q6PID6 262 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-232ENST00000557487 OTOP3Q7RTS5 596 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 GPR180Q86V85 440 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 TMEM86AQ8N2M4 240 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 MINDY1Q8N5J2 469 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 ATPAF2Q8N5M1 289 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 BRI3BPQ8WY22 251 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 PTPN18Q99952 460 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 GPATCH1Q9BRR8 931 aaKnown RBP16.37■□□□□ 0.21
SHMT2-232ENST00000557487 TKTL2Q9H0I9 626 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 TBC1D13Q9NVG8 400 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 FAIMQ9NVQ4 179 aa16.37■□□□□ 0.21
SHMT2-232ENST00000557487 SMIM35A0A1B0GVV1 85 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 MATN3O15232 486 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 FGF10O15520 208 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-232ENST00000557487 LEPRP48357 1165 aaKnown RBP16.36■□□□□ 0.21
SHMT2-232ENST00000557487 LHX1P48742 406 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 GALK1P51570 392 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 SLC7A2P52569 658 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 NFKB2Q00653 900 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 RALGDSQ12967 914 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 TMED1Q13445 227 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 CSHL1Q14406 222 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 ACBD5Q5T8D3 534 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-232ENST00000557487 BEND5Q7L4P6 421 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 FASTKD5Q7L8L6 764 aaKnown RBP16.36■□□□□ 0.21
SHMT2-232ENST00000557487 ZNF354CQ86Y25 554 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 SCML4Q8N228 414 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 IPMKQ8NFU5 416 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 TSPEARQ8WU66 669 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 TMIGD2Q96BF3 282 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 ISOC1Q96CN7 298 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 CNDP2Q96KP4 475 aaKnown RBP16.36■□□□□ 0.21
SHMT2-232ENST00000557487 FICDQ9BVA6 458 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 GID8Q9NWU2 228 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 ZNF510Q9Y2H8 683 aa16.36■□□□□ 0.21
SHMT2-232ENST00000557487 ZNF638Q14966 1978 aaKnown RBP16.36■□□□□ 0.21
SHMT2-232ENST00000557487 CCL15-CCL14A0A0B4J2E2 113 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 KANSL1LA0AUZ9 987 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 ZSCAN9O15535 394 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-232ENST00000557487 CBFA2T3O75081 653 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 GPIP06744 558 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 HOXB8P17481 243 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-232ENST00000557487 AKAP5P24588 427 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 FASP25445 335 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 PSMA4P25789 261 aaKnown RBP16.35■□□□□ 0.21
SHMT2-232ENST00000557487 HMOX2P30519 316 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 CCL15Q16663 113 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 ZNF792Q3KQV3 632 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 CYP2R1Q6VVX0 501 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 Q6ZNX1 250 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 ZNF467Q7Z7K2 595 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-232ENST00000557487 CENPNQ96H22 339 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-232ENST00000557487 UBXN10Q96LJ8 280 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 ZNF512Q96ME7 567 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-232ENST00000557487 DOK1Q99704 481 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 CHST12Q9NRB3 414 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 AGPAT4Q9NRZ5 378 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 RHBDL2Q9NX52 303 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 ACTR3BQ9P1U1 418 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 A0A1B0GTW7 788 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 DHRS12A0PJE2 317 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 ZNF839A8K0R7 811 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 SOCS2O14508 198 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 TIPRLO75663 272 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 PAPSS2O95340 614 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-232ENST00000557487 FGFR3P22607 806 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 HOXC13P31276 330 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms