RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 LSM4Q9Y4Z0 139 aaKnown RBP4.67□□□□□ -1.66
SCFD1-221ENST00000556534 NPIPB15A6NHN6 443 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-221ENST00000556534 PAPSS2O95340 614 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-221ENST00000556534 HOXB5P09067 269 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 IGHV4-30-4P0DP06 118 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 CD58P19256 250 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 GPTP24298 496 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 HNRNPH1P31943 449 aaKnown RBP4.66□□□□□ -1.66
SCFD1-221ENST00000556534 CPOXP36551 454 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 CASP6P55212 293 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 POU5F1BQ06416 359 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 TBX2Q13207 712 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-221ENST00000556534 G3BP1Q13283 466 aaKnown RBP eCLIP4.66□□□□□ -1.66
SCFD1-221ENST00000556534 ITGADQ13349 1161 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 PPP6R3Q5H9R7 873 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-221ENST00000556534 NADSYN1Q6IA69 706 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 FBXO46Q6PJ61 603 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-221ENST00000556534 CPLX2Q6PUV4 134 aaKnown RBP4.66□□□□□ -1.66
SCFD1-221ENST00000556534 NEK10Q6ZWH5 1172 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 LINGO2Q7L985 606 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 ZBTB2Q8N680 514 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 SCCPDHQ8NBX0 429 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 BEST2Q8NFU1 509 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 METTL6Q8TCB7 284 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 EVI5LQ96CN4 794 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 SAAL1Q96ER3 474 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 TM6SF1Q9BZW5 370 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 SPRY4Q9C004 299 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 BPIFA1Q9NP55 256 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 MKKSQ9NPJ1 570 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-221ENST00000556534 TAS2R10Q9NYW0 307 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 CDC14AQ9UNH5 594 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 STON1Q9Y6Q2 735 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 CAPN7Q9Y6W3 813 aa4.66□□□□□ -1.66
SCFD1-221ENST00000556534 KRTAP29-1A8MX34 341 aaPredicted RBP4.65□□□□□ -1.67
SCFD1-221ENST00000556534 J3KRW8 73 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 SNAP23O00161 211 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 IKBKBO14920 756 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 TGFB1I1O43294 461 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 ZIC3O60481 467 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 MTA2O94776 668 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 CYC1P08574 325 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 FGF3P11487 239 aaPredicted RBP4.65□□□□□ -1.67
SCFD1-221ENST00000556534 SSTR2P30874 369 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 CDAP32320 146 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 ICAM3P32942 547 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 CTCFP49711 727 aaPredicted RBP4.65□□□□□ -1.67
SCFD1-221ENST00000556534 EIF3BP55884 814 aaKnown RBP4.65□□□□□ -1.67
SCFD1-221ENST00000556534 MPP1Q00013 466 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 GRSF1Q12849 480 aaKnown RBP eCLIP4.65□□□□□ -1.67
SCFD1-221ENST00000556534 C9orf57Q5W0N0 161 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 CCDC70Q6NSX1 233 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.65□□□□□ -1.675e-11■■■■■ 37.4
SCFD1-221ENST00000556534 ZC3HC1Q86WB0 502 aaKnown RBP4.65□□□□□ -1.67
SCFD1-221ENST00000556534 ZCCHC9Q8N567 271 aaKnown RBP4.65□□□□□ -1.67
SCFD1-221ENST00000556534 ZNF114Q8NC26 417 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 AGBL3Q8NEM8 1001 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 HUS1BQ8NHY5 278 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 WASF1Q92558 559 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 PIP5K1AQ99755 562 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 HAUS8Q9BT25 410 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 MMTAG2Q9BU76 263 aaKnown RBP4.65□□□□□ -1.67
SCFD1-221ENST00000556534 SLC26A6Q9BXS9 759 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 NOX4Q9NPH5 578 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 PCDHB16Q9NRJ7 776 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 SLC6A13Q9NSD5 602 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 SLC9A2Q9UBY0 812 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 LRP12Q9Y561 859 aa4.65□□□□□ -1.67
SCFD1-221ENST00000556534 TMEM202A6NGA9 273 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 USP17L23D6RBM5 183 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 SEC14L5O43304 696 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 NDUFS7O75251 213 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 TBX18O95935 607 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 HOXB6P17509 224 aaKnown RBP4.64□□□□□ -1.67
SCFD1-221ENST00000556534 ELF1P32519 619 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 RGS2P41220 211 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 GNAQP50148 359 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 ART1P52961 327 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 TUBA1BP68363 451 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 DDR1Q08345 913 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 FGFBP1Q14512 234 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 ASIC2Q16515 512 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 TSTQ16762 297 aaKnown RBP4.64□□□□□ -1.67
SCFD1-221ENST00000556534 XKR9Q5GH70 373 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 B3GNT6Q6ZMB0 384 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 C16orf82Q7Z2V1 217 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 ARMC9Q7Z3E5 817 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 R3HCC1LQ7Z5L2 792 aaKnown RBP4.64□□□□□ -1.67
SCFD1-221ENST00000556534 FOXRED2Q8IWF2 684 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 CNTROBQ8N137 903 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 PGBD5Q8N414 524 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 RFFLQ8WZ73 363 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 SLITRK1Q96PX8 696 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 KRTAP1-5Q9BYS1 174 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 UNC45AQ9H3U1 944 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 GAREM1Q9H706 876 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 ABI3Q9P2A4 366 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 SLCO3A1Q9UIG8 710 aa4.64□□□□□ -1.67
SCFD1-221ENST00000556534 INTS6Q9UL03 887 aaKnown RBP4.64□□□□□ -1.67
SCFD1-221ENST00000556534 MKLN1Q9UL63 735 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms