RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 PAGE2Q7Z2X7 111 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 CMTR2Q8IYT2 770 aaKnown RBP9.6□□□□□ -0.87
SIX4-202ENST00000554079 KIAA1958Q8N8K9 716 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 RDH13Q8NBN7 331 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 ACTL9Q8TC94 416 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 ZFAND1Q8TCF1 268 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 PPP1R13LQ8WUF5 828 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 DHX38Q92620 1227 aaKnown RBP9.6□□□□□ -0.87
SIX4-202ENST00000554079 SEMA4DQ92854 862 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 YIPF6Q96EC8 236 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 CENPNQ96H22 339 aaPredicted RBP9.6□□□□□ -0.87
SIX4-202ENST00000554079 DCAF5Q96JK2 942 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.6□□□□□ -0.87
SIX4-202ENST00000554079 RSPH9Q9H1X1 276 aaPredicted RBP9.6□□□□□ -0.87
SIX4-202ENST00000554079 PCIF1Q9H4Z3 704 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 NTN4Q9HB63 628 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 PRDM8Q9NQV8 689 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 ITM2CQ9NQX7 267 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 SNX7Q9UNH6 387 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 GRIP1Q9Y3R0 1128 aa9.6□□□□□ -0.87
SIX4-202ENST00000554079 MAGEB16A2A368 324 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 HMX3A6NHT5 357 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 KCNU1A8MYU2 1149 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 ZNF623O75123 536 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 CPNE3O75131 537 aaKnown RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 FGF18O76093 207 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 HSPA4LO95757 839 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 CHRNA1P02708 482 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 ALBP02768 609 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 ALDOAP04075 364 aaKnown RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 PCNAP12004 261 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 ACVR2AP27037 513 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 GGT5P36269 586 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 IL1RL1Q01638 556 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 ZNF252P-AS1Q0IIN9 211 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 TOP3AQ13472 1001 aaPredicted RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 MAMLD1Q13495 774 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 KRR1Q13601 381 aaKnown RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 DPYSL3Q14195 570 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 SQLEQ14534 574 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 MFSD10Q14728 455 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 TXNRD3NBQ6F5E7 133 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 C8orf82Q6P1X6 216 aaPredicted RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 PNCKQ6P2M8 343 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 TRMT10BQ6PF06 316 aaKnown RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 GK5Q6ZS86 529 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 USP37Q86T82 979 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 DHFR2Q86XF0 187 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 DDIASQ8IXT1 998 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 C2orf69Q8N8R5 385 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 RSAD2Q8WXG1 361 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 BIRC7Q96CA5 298 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 MUS81Q96NY9 551 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 OPALINQ96PE5 141 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 IER2Q9BTL4 223 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 FRMD8P1Q9BZ68 369 aaPredicted RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 ROGDIQ9GZN7 287 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 UPF3AQ9H1J1 476 aaKnown RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 RIOX1Q9H6W3 641 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 ZNF556Q9HAH1 456 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 VAT1LQ9HCJ6 419 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 SNX15Q9NRS6 342 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 B3GNT2Q9NY97 397 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 TAS2R7Q9NYW3 318 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 RBAKQ9NYW8 714 aaPredicted RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 DTLQ9NZJ0 730 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 GMPR2Q9P2T1 348 aaKnown RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 SAE1Q9UBE0 346 aaPredicted RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 OPTCQ9UBM4 332 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 ZC3H7BQ9UGR2 993 aaKnown RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 OSGIN1Q9UJX0 560 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 RIMKLBQ9ULI2 386 aa9.59□□□□□ -0.87
SIX4-202ENST00000554079 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.59□□□□□ -0.87
SIX4-202ENST00000554079 COPG1Q9Y678 874 aaKnown RBP9.59□□□□□ -0.87
SIX4-202ENST00000554079 AGAP5A6NIR3 686 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 C3orf70A6NLC5 250 aaPredicted RBP9.58□□□□□ -0.88
SIX4-202ENST00000554079 ZNF99A8MXY4 864 aaPredicted RBP9.58□□□□□ -0.88
SIX4-202ENST00000554079 RNGTTO60942 597 aaKnown RBP9.58□□□□□ -0.88
SIX4-202ENST00000554079 CCNE2O96020 404 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 CYP2A6P11509 494 aaPredicted RBP9.58□□□□□ -0.88
SIX4-202ENST00000554079 IFI30P13284 250 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 IL7RP16871 459 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 MPSTP25325 297 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 FASP25445 335 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 CNTFP26441 200 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 GPR85P60893 370 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 VBP1P61758 197 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 LRRC38Q5VT99 294 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 USP17L2Q6R6M4 530 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 DPY19L3Q6ZPD9 716 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 LIX1LQ8IVB5 337 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 CARNMT1Q8N4J0 409 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 CCDC24Q8N4L8 307 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 NAT16Q8N8M0 369 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 GLB1L3Q8NCI6 653 aaPredicted RBP9.58□□□□□ -0.88
SIX4-202ENST00000554079 ACSF2Q96CM8 615 aaPredicted RBP9.58□□□□□ -0.88
SIX4-202ENST00000554079 HSFY1Q96LI6 401 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 NT5C1BQ96P26 610 aa9.58□□□□□ -0.88
SIX4-202ENST00000554079 TMEM181Q9P2C4 612 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms