RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 SEMA6CQ9H3T2 930 aa10.6□□□□□ -0.71
VPS29-208ENST00000550267 NDFIP2Q9NV92 336 aa10.6□□□□□ -0.71
VPS29-208ENST00000550267 APPL1Q9UKG1 709 aa10.6□□□□□ -0.71
VPS29-208ENST00000550267 COQ6Q9Y2Z9 468 aa10.6□□□□□ -0.71
VPS29-208ENST00000550267 RP1P56715 2156 aa10.6□□□□□ -0.71
VPS29-208ENST00000550267 TRPM6Q9BX84 2022 aa10.6□□□□□ -0.71
VPS29-208ENST00000550267 SCN8AQ9UQD0 1980 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 RELNP78509 3460 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 BLACEA4D250 179 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.59□□□□□ -0.71
VPS29-208ENST00000550267 CCL4P13236 92 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 GLB1P16278 677 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 CD82P27701 267 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 CASRP41180 1078 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 PEX5P50542 639 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 SRP54P61011 504 aaKnown RBP10.59□□□□□ -0.71
VPS29-208ENST00000550267 SERINC3Q13530 473 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 NFATC4Q14934 902 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 ARHGAP44Q17R89 818 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 PTPN20Q4JDL3 420 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 ATXN7L2Q5T6C5 722 aaPredicted RBP10.59□□□□□ -0.71
VPS29-208ENST00000550267 HIST2H2BCQ6DN03 193 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 ISM2Q6H9L7 571 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 GDPD4Q6W3E5 623 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 SLCO4C1Q6ZQN7 724 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 SPRED1Q7Z699 444 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 FAM26EQ8N5C1 309 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 ZNF397Q8NF99 534 aaPredicted RBP10.59□□□□□ -0.71
VPS29-208ENST00000550267 OR2AP1Q8NGE2 309 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 NKD1Q969G9 470 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 SNX21Q969T3 373 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 PGAP3Q96FM1 320 aaPredicted RBP10.59□□□□□ -0.71
VPS29-208ENST00000550267 PDXPQ96GD0 296 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 CCDC34Q96HJ3 373 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 PSMG3-AS1Q96PY0 264 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 GSDMAQ96QA5 445 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 TBCBQ99426 244 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 APOOQ9BUR5 198 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 ZYG11BQ9C0D3 744 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 RRN3Q9NYV6 651 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.59□□□□□ -0.71
VPS29-208ENST00000550267 NBPF19A0A087WUL8 3843 aa10.59□□□□□ -0.71
VPS29-208ENST00000550267 TMEM110-MUSTN1A8MSY1 372 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 B4DGG1 531 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 STMND1H3BQB6 276 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 PSMA7O14818 248 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 POP4O95707 220 aaKnown RBP10.58□□□□□ -0.72
VPS29-208ENST00000550267 GSRP00390 522 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 ATP1A2P50993 1020 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 ARSDP51689 593 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 SNRPD1P62314 119 aaKnown RBP10.58□□□□□ -0.72
VPS29-208ENST00000550267 NCAPHQ15003 741 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 LRRC14Q15048 493 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 POLD3Q15054 466 aaPredicted RBP10.58□□□□□ -0.72
VPS29-208ENST00000550267 WSCD2Q2TBF2 565 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 MYLK3Q32MK0 819 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 CERCAMQ5T4B2 595 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 TMEM164Q5U3C3 297 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 OGFOD3Q6PK18 319 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 TRIM59Q8IWR1 403 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 FAM46DQ8NEK8 389 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 ARHGEF2Q92974 986 aaKnown RBP10.58□□□□□ -0.72
VPS29-208ENST00000550267 SMARCE1Q969G3 411 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 NT5C3BQ969T7 300 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 PMEPA1Q969W9 287 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 RBM15Q96T37 977 aaKnown RBP eCLIP10.58□□□□□ -0.72
VPS29-208ENST00000550267 OSBPL1AQ9BXW6 950 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 SYNCQ9H7C4 482 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 RDH14Q9HBH5 336 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 PLCB1Q9NQ66 1216 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 ZNF71Q9NQZ8 489 aaPredicted RBP10.58□□□□□ -0.72
VPS29-208ENST00000550267 LRIT1Q9P2V4 623 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 KLQ9UEF7 1012 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 ANAPC2Q9UJX6 822 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 STAP1Q9ULZ2 295 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 OR1A2Q9Y585 309 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 PAXBP1Q9Y5B6 917 aa10.58□□□□□ -0.72
VPS29-208ENST00000550267 FAM170AA1A519 330 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 F9P00740 461 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 TNFP01375 233 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 PCCBP05166 539 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 LIFP15018 202 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 PNLIPP16233 465 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 HTR1BP28222 390 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 CCR10P46092 362 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 B4GALNT1Q00973 533 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 APBA1Q02410 837 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 STIM1Q13586 685 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 ARHGEF7Q14155 803 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 HLTFQ14527 1009 aaKnown RBP eCLIP10.57□□□□□ -0.72
VPS29-208ENST00000550267 INPP5AQ14642 412 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 SLC25A52Q3SY17 297 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 MAP9Q49MG5 647 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 TMEM52BQ4KMG9 183 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 C14orf28Q4W4Y0 310 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 KLHL10Q6JEL2 608 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 TTI2Q6NXR4 508 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 ENOSF1Q7L5Y1 443 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 TAF8Q7Z7C8 310 aa10.57□□□□□ -0.72
VPS29-208ENST00000550267 HSCBQ8IWL3 235 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms