RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 RGS9BPQ6ZS82 235 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.65□□□□□ -1.03
CLIP1-218ENST00000545889 ICA1LQ8NDH6 482 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 ATL1Q8WXF7 558 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 NDRG1Q92597 394 aaKnown RBP8.65□□□□□ -1.03
CLIP1-218ENST00000545889 TMEM121Q9BTD3 319 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 KATNBL1Q9H079 304 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.65□□□□□ -1.03
CLIP1-218ENST00000545889 IL1RAPL1Q9NZN1 696 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 ITGB1BP2Q9UKP3 347 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 TMEM120BA0PK00 339 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 CPED1A4D0V7 1026 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 AIM2O14862 343 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 BUD23O43709 281 aaKnown RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 CNPP09543 421 aaKnown RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 HNRNPH3P31942 346 aaKnown RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 RPIAP49247 311 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 DGKGP49619 791 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 NAA20P61599 178 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 RPL7AP62424 266 aaKnown RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 LONRF1Q17RB8 773 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 VITQ6UXI7 678 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 AGMOQ6ZNB7 445 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 P3H2Q8IVL5 708 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 SCAIQ8N9R8 606 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 OR6K2Q8NGY2 324 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 FERD3LQ96RJ6 166 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 SLC38A3Q99624 504 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 RNF103O00237 685 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 SYN3O14994 580 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 CLDN11O75508 207 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 CDK14O94921 469 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 DGKAP23743 735 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 NOS3P29474 1203 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 MTHFRP42898 656 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 DSG1Q02413 1049 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 MGAT5Q09328 741 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 GRM3Q14832 879 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 ARL14EPQ8N8R7 260 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 IRF7Q92985 503 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 BTBD9Q96Q07 612 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 ISCUQ9H1K1 167 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 INTS7Q9NVH2 962 aaKnown RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 IMPAD1Q9NX62 359 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 SLC12A4Q9UP95 1085 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 CARD8Q9Y2G2 431 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 COQ4Q9Y3A0 265 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 NR2E1Q9Y466 385 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 CPQQ9Y646 472 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 SIPA1L1O43166 1804 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 A0A0U1RQF3 1178 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 E7ENQ6 273 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 FTH1P02794 183 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 CFHP08603 1231 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 CDH3P22223 829 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 JAK1P23458 1154 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 CORO1AP31146 461 aaKnown RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 MASP1P48740 699 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 SERPINH1P50454 418 aaKnown RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 NOMO3P69849 1222 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 RGS1Q08116 209 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 SLC29A2Q14542 456 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 C15orf59Q2T9L4 293 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 C1orf220Q5T0J3 134 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 UTS2BQ765I0 119 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 TMCO2Q7Z6W1 182 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 COMMD2Q86X83 199 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 HID1Q8IV36 788 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 FBXO39Q8N4B4 442 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 TNIP2Q8NFZ5 429 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 TWNKQ96RR1 684 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 COPS8Q99627 209 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 ZNF184Q99676 751 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 STRA6Q9BX79 667 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 TBC1D23Q9NUY8 699 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 NCKIPSDQ9NZQ3 722 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 PRKAG3Q9UGI9 489 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 SIX4Q9UIU6 781 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 ZMYM5Q9UJ78 669 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 AGO1Q9UL18 857 aaKnown RBP8.64□□□□□ -1.03
CLIP1-218ENST00000545889 V9GYQ6 96 aa8.64□□□□□ -1.03
CLIP1-218ENST00000545889 MBLAC1A4D2B0 266 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-218ENST00000545889 SRRM3A6NNA2 597 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-218ENST00000545889 H0Y858 1186 aa8.63□□□□□ -1.03
CLIP1-218ENST00000545889 LAMTOR5O43504 91 aa8.63□□□□□ -1.03
CLIP1-218ENST00000545889 KRT36O76013 467 aa8.63□□□□□ -1.03
CLIP1-218ENST00000545889 ABCB1P08183 1280 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-218ENST00000545889 MIPP30301 263 aa8.63□□□□□ -1.03
CLIP1-218ENST00000545889 FMO4P31512 558 aa8.63□□□□□ -1.03
CLIP1-218ENST00000545889 NR2C2P49116 596 aa8.63□□□□□ -1.03
CLIP1-218ENST00000545889 CAP1Q01518 475 aa8.63□□□□□ -1.03
CLIP1-218ENST00000545889 SRSF11Q05519 484 aaKnown RBP8.63□□□□□ -1.03
CLIP1-218ENST00000545889 CYP4Z1Q86W10 505 aa8.63□□□□□ -1.03
CLIP1-218ENST00000545889 DDHD1Q8NEL9 900 aa8.63□□□□□ -1.03
CLIP1-218ENST00000545889 METTL6Q8TCB7 284 aa8.63□□□□□ -1.03
CLIP1-218ENST00000545889 GIPC3Q8TF64 312 aa8.63□□□□□ -1.03
CLIP1-218ENST00000545889 GFM2Q969S9 779 aaKnown RBP8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms