RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 NOL6Q9H6R4 1146 aaKnown RBP15.11■□□□□ 0.01
USP28-214ENST00000545540 UXTQ9UBK9 157 aaPredicted RBP15.11■□□□□ 0.01
USP28-214ENST00000545540 EVLQ9UI08 416 aaPredicted RBP15.11■□□□□ 0.01
USP28-214ENST00000545540 CDH9Q9ULB4 789 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 USP34Q70CQ2 3546 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 UBA6A0AVT1 1052 aaPredicted RBP15.1■□□□□ 0.01
USP28-214ENST00000545540 H3BMM5 538 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 TMX2-CTNND1H3BSU7 103 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 HOXD8P13378 290 aaPredicted RBP15.1■□□□□ 0.01
USP28-214ENST00000545540 NCK1P16333 377 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 CCNCP24863 283 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 THPOP40225 353 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 HCAR3P49019 387 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 USP46P62068 366 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 SH3BP2P78314 561 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 PLOD1Q02809 727 aaPredicted RBP15.1■□□□□ 0.01
USP28-214ENST00000545540 LSAMPQ13449 338 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 TRIM25Q14258 630 aaKnown RBP15.1■□□□□ 0.01
USP28-214ENST00000545540 UGP2Q16851 508 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 TECRLQ5HYJ1 363 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 PIK3R6Q5UE93 754 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 TRPC4APQ8TEL6 797 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 VPS33AQ96AX1 596 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 VAT1Q99536 393 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 PRSS51A0A1B0GVH4 220 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 FAM58BPP0C7Q3 252 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 ARL1P40616 181 aaPredicted RBP15.1■□□□□ 0.01
USP28-214ENST00000545540 ZFAND2BQ8WV99 257 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 TREX1Q9NSU2 369 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 VTI1BQ9UEU0 232 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 MID2Q9UJV3 735 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 VWA7Q9Y334 891 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 ARHGEF37A1IGU5 675 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 TRIM38O00635 465 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 MTHFD1P11586 935 aaKnown RBP15.1■□□□□ 0.01
USP28-214ENST00000545540 ZNF26P17031 533 aaPredicted RBP15.1■□□□□ 0.01
USP28-214ENST00000545540 PCSK1P29120 753 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 ADRA1AP35348 466 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 RPL5P46777 297 aaKnown RBP15.1■□□□□ 0.01
USP28-214ENST00000545540 CHST15Q7LFX5 561 aaPredicted RBP15.1■□□□□ 0.01
USP28-214ENST00000545540 MARVELD2Q8N4S9 558 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 CPSF7Q8N684 471 aaKnown RBP15.1■□□□□ 0.01
USP28-214ENST00000545540 TRIML2Q8N7C3 387 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 B4GALNT2Q8NHY0 566 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 BTBD9Q96Q07 612 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 MID1IP1Q9NPA3 183 aa15.1■□□□□ 0.01
USP28-214ENST00000545540 SEMA4BQ9NPR2 832 aaPredicted RBP15.1■□□□□ 0.01
USP28-214ENST00000545540 M0QZ92 97 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 GPR39O43194 453 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 PYGLP06737 847 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 ACVRL1P37023 503 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 CSRP3P50461 194 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 RPS6KA3P51812 740 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 RAP1GAP2Q684P5 730 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 HMBOX1Q6NT76 420 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 PIWIL4Q7Z3Z4 852 aaKnown RBP15.09■□□□□ 0.01
USP28-214ENST00000545540 FUNDC1Q8IVP5 155 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 ATAD1Q8NBU5 361 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 KLHDC9Q8NEP7 349 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 DNAJB14Q8TBM8 379 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 IL12RB2Q99665 862 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 AKTIPQ9H8T0 292 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 VCX3AQ9NNX9 186 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 UTP6Q9NYH9 597 aaKnown RBP15.09■□□□□ 0.01
USP28-214ENST00000545540 SLC27A5Q9Y2P5 690 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 MYLKQ15746 1914 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 UNC80Q8N2C7 3258 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 SOCS2O14508 198 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 H2AFYO75367 372 aaKnown RBP15.09■□□□□ 0.01
USP28-214ENST00000545540 LTA4HP09960 611 aaKnown RBP15.09■□□□□ 0.01
USP28-214ENST00000545540 GEMP55040 296 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 LRP8Q14114 963 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 INTS6LQ5JSJ4 861 aaKnown RBP15.09■□□□□ 0.01
USP28-214ENST00000545540 SPATA2LQ8IUW3 424 aaPredicted RBP15.09■□□□□ 0.01
USP28-214ENST00000545540 PTGR2Q8N8N7 351 aaPredicted RBP15.09■□□□□ 0.01
USP28-214ENST00000545540 DGCR14Q96DF8 476 aaKnown RBP15.09■□□□□ 0.01
USP28-214ENST00000545540 CCT7Q99832 543 aa15.09■□□□□ 0.01
USP28-214ENST00000545540 ARHGAP10A1A4S6 786 aa15.08■□□□□ 0.01
USP28-214ENST00000545540 HEATR9A2RTY3 570 aa15.08■□□□□ 0.01
USP28-214ENST00000545540 SNRPB2P08579 225 aaKnown RBP15.08■□□□□ 0.01
USP28-214ENST00000545540 ATP6V1B2P21281 511 aa15.08■□□□□ 0.01
USP28-214ENST00000545540 PRDX3P30048 256 aaKnown RBP15.08■□□□□ 0.01
USP28-214ENST00000545540 SERPINH1P50454 418 aaKnown RBP15.08■□□□□ 0.01
USP28-214ENST00000545540 DIO3P55073 304 aa15.08■□□□□ 0.01
USP28-214ENST00000545540 COG7P83436 770 aa15.08■□□□□ 0.01
USP28-214ENST00000545540 SEMA3AQ14563 771 aa15.08■□□□□ 0.01
USP28-214ENST00000545540 AGAP9Q5VTM2 703 aa15.08■□□□□ 0.01
USP28-214ENST00000545540 APLFQ8IW19 511 aaPredicted RBP15.08■□□□□ 0.01
USP28-214ENST00000545540 RDH11Q8TC12 318 aa15.08■□□□□ 0.01
USP28-214ENST00000545540 RGS18Q9NS28 235 aa15.08■□□□□ 0.01
USP28-214ENST00000545540 PADI3Q9ULW8 664 aa15.08■□□□□ 0.01
USP28-214ENST00000545540 NOD1Q9Y239 953 aa15.08■□□□□ 0.01
USP28-214ENST00000545540 TBC1D30Q9Y2I9 924 aa15.08■□□□□ 0.01
USP28-214ENST00000545540 TRPC5OSA6NMA1 111 aa15.08■□□□□ 0
USP28-214ENST00000545540 ENPP3O14638 875 aa15.08■□□□□ 0
USP28-214ENST00000545540 DENRO43583 198 aaKnown RBP15.08■□□□□ 0
USP28-214ENST00000545540 CDKN1CP49918 316 aaPredicted RBP15.08■□□□□ 0
USP28-214ENST00000545540 MRPS6P82932 125 aaKnown RBP15.08■□□□□ 0
USP28-214ENST00000545540 PURAQ00577 322 aaKnown RBP15.08■□□□□ 0
USP28-214ENST00000545540 MAP7D1Q3KQU3 841 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms