RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 MAN2B2Q9Y2E5 1009 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 CCDC162PA2VCL2 907 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 CCDC182A6NF36 153 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 AP5Z1O43299 807 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 RAMP2O60895 175 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 CALCAP01258 141 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 IL6P05231 212 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 TCF4P15884 667 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 RPL17P18621 184 aaKnown RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 PAICSP22234 425 aaKnown RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 FECHP22830 423 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 TKTL1P51854 596 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 IL5RAQ01344 420 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 SF3B4Q15427 424 aaKnown RBP eCLIP7.85□□□□□ -1.158e-10■■■■■ 49.5
VPS13D-211ENST00000543710 ADAMTSL2Q86TH1 951 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ZFPM1Q8IX07 1006 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 MCEMP1Q8IX19 187 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 KIF2BQ8N4N8 673 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 REPS2Q8NFH8 660 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 HM13Q8TCT9 377 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 SYTL5Q8TDW5 730 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 NXPE3Q969Y0 559 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 MTERF3Q96E29 417 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 CBWD1Q9BRT8 395 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 TDRD1Q9BXT4 1180 aaKnown RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ACSS3Q9H6R3 686 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 GJB4Q9NTQ9 266 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 OPTCQ9UBM4 332 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ZNF112Q9UJU3 913 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 VPS28Q9UK41 221 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 KCPQ6ZWJ8 1503 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 E9PBE3 544 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 FGF1P05230 155 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 SMIM10L2AP0DMW4 78 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 SMIM10L2BP0DMW5 78 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 COL6A1P12109 1028 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 AGXTP21549 392 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 YWHAQP27348 245 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 GTF2E2P29084 291 aaKnown RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 TPP2P29144 1249 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 PBX1P40424 430 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ACADVLP49748 655 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 CREB5Q02930 508 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 GAD2Q05329 585 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 STX4Q12846 297 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 AGKQ53H12 422 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 TTMPQ5BVD1 217 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 TNFAIP8L3Q5GJ75 292 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 AGMOQ6ZNB7 445 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 C16orf62Q7Z3J2 963 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 GLT6D1Q7Z4J2 308 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 WDR48Q8TAF3 677 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 TP53INP1Q96A56 240 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ZNF668Q96K58 619 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 DCBLD2Q96PD2 775 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ENTPD4Q9Y227 616 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 GIT1Q9Y2X7 761 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 DLX3O60479 287 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ANXA5P08758 320 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 PCNAP12004 261 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 HGFP14210 728 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ADRA1DP25100 572 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 MLH1P40692 756 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ELK3P41970 407 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ASMTP46597 345 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 UGT2B15P54855 530 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 IL2P60568 153 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 YWHAZP63104 245 aaKnown RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 MAMLD1Q13495 774 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 TCEAL1Q15170 157 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 TMEM63BQ5T3F8 832 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 LCN1P1Q5VSP4 162 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 PLEKHA7Q6IQ23 1121 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 TATDN1Q6P1N9 297 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 GPSM1Q86YR5 675 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 HIPK1Q86Z02 1210 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 IL22RA1Q8N6P7 574 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 PIWIL2Q8TC59 973 aaKnown RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 DENND1AQ8TEH3 1009 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 CXorf40BQ96DE9 158 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 MLPHQ9BV36 600 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 SPRTNQ9H040 489 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 USP29Q9HBJ7 922 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 NFKBIEO00221 500 aa7.84□□□□□ -1.15
VPS13D-211ENST00000543710 CCNYL3P0C7X3 344 aa7.84□□□□□ -1.15
VPS13D-211ENST00000543710 INSRRP14616 1297 aa7.84□□□□□ -1.15
VPS13D-211ENST00000543710 ZNF12P17014 697 aa7.84□□□□□ -1.15
VPS13D-211ENST00000543710 HDCP19113 662 aa7.84□□□□□ -1.15
VPS13D-211ENST00000543710 S100A3P33764 101 aa7.84□□□□□ -1.15
VPS13D-211ENST00000543710 INHBCP55103 352 aa7.84□□□□□ -1.15
VPS13D-211ENST00000543710 PPIDQ08752 370 aaKnown RBP7.84□□□□□ -1.15
VPS13D-211ENST00000543710 ZNHIT3Q15649 155 aaPredicted RBP7.84□□□□□ -1.15
VPS13D-211ENST00000543710 FBXO43Q4G163 708 aa7.84□□□□□ -1.15
VPS13D-211ENST00000543710 ATP13A4Q4VNC1 1196 aa7.84□□□□□ -1.15
VPS13D-211ENST00000543710 RALGPS1Q5JS13 557 aa7.84□□□□□ -1.15
VPS13D-211ENST00000543710 C1orf186Q6ZWK4 172 aa7.84□□□□□ -1.15
VPS13D-211ENST00000543710 FUKQ8N0W3 1084 aa7.84□□□□□ -1.15
VPS13D-211ENST00000543710 ZCCHC7Q8N3Z6 543 aaKnown RBP7.84□□□□□ -1.15
VPS13D-211ENST00000543710 LINC00471Q8N535 108 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms