RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-205	ENST00000536107	MKRN2OS	H3BPM6	223 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	ACKR2	O00590	384 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	SH2B2	O14492	632 aa	Predicted RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	AQP7	O14520	342 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	NVL	O15381	856 aa	Known RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	HOXC11	O43248	304 aa	Predicted RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	MAGEC1	O60732	1142 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	TCEA3	O75764	348 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	PSMD10	O75832	226 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	NOL4	O94818	638 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	ESRRB	O95718	433 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	IGHV4-34	P06331	123 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	MBL2	P11226	248 aa	Predicted RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	KCNE1	P15382	129 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	TYMP	P19971	482 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	SDHA	P31040	664 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	ARL2	P36404	184 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	ZNF132	P52740	706 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	ART1	P52961	327 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	MAPK10	P53779	464 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	PTTG1IP	P53801	180 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	PER3	P56645	1201 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	NLRP5	P59047	1200 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	RNASE9	P60153	205 aa	Known RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	ZXDB	P98169	803 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	MYL7	Q01449	175 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	ALDH6A1	Q02252	535 aa	Known RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	LTB	Q06643	244 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	SPAG1	Q07617	926 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	SSRP1	Q08945	709 aa	Known RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	EIF3I	Q13347	325 aa	Known RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	ZNF177	Q13360	481 aa	Predicted RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	FGL2	Q14314	439 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	DHX8	Q14562	1220 aa	Known RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	TTC31	Q49AM3	519 aa	Predicted RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	TMCO4	Q5TGY1	634 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	SERPINA13P	Q6UXR4	307 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107		Q71RC1	249 aa	Predicted RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	TMPRSS9	Q7Z410	1059 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	DDX42	Q86XP3	938 aa	Known RBP eCLIP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	CCDC83	Q8IWF9	413 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	TPH2	Q8IWU9	490 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	SLC25A45	Q8N413	288 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	OR2T3	Q8NH03	318 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	EXOC6	Q8TAG9	804 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	DEPTOR	Q8TB45	409 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	RILPL2	Q969X0	211 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	LXN	Q9BS40	222 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	NDC1	Q9BTX1	674 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	DUSP26	Q9BV47	211 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	BBS2	Q9BXC9	721 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	INTS2	Q9H0H0	1204 aa	Known RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	ZCWPW1	Q9H0M4	648 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	USP29	Q9HBJ7	922 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	PREB	Q9HCU5	417 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	AKIP1	Q9NQ31	210 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	XPNPEP1	Q9NQW7	623 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	SPHK2	Q9NRA0	654 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	MAGEL2	Q9UJ55	1249 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	TRAF6	Q9Y4K3	522 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	PTPRJ	Q12913	1337 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	KNL1	Q8NG31	2342 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	NUP210	Q8TEM1	1887 aa	Predicted RBP	4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	PTPRD	P23468	1912 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	LRRK1	Q38SD2	2015 aa		4.11	□□□□□ -1.75
YBX3-205	ENST00000536107	ATR	Q13535	2644 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	BAZ2B	Q9UIF8	2168 aa	Known RBP	4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	PRAMEF33	A0A0G2JMD5	474 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	NEMP2	A6NFY4	417 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	LRRC72	A6NJI9	287 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	CGB1	A6NKQ9	187 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	TMX2-CTNND1	H3BSU7	103 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	NPC1	O15118	1278 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	NKX2-8	O15522	239 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	USO1	O60763	962 aa	Known RBP	4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	PRAMEF10	O60809	474 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	STC2	O76061	302 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	IRF1	P10914	325 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	TYR	P14679	529 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	COX6B1	P14854	86 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	MX1	P20591	662 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	PDC	P20941	246 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	DGKA	P23743	735 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	CYP2F1	P24903	491 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	CIITA	P33076	1130 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	CSTF2	P33240	577 aa	Known RBP eCLIP	4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	PTGER4	P35408	488 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	COPA	P53621	1224 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	ANTXR2	P58335	489 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	SLC7A9	P82251	487 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	TSPY1	Q01534	308 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	CTTN	Q14247	550 aa	Known RBP	4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	E2F5	Q15329	346 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	INPP5J	Q15735	1006 aa	Predicted RBP	4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	NFE2	Q16621	373 aa	Predicted RBP	4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	FAM187B	Q17R55	369 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	BEAN1	Q3B7T3	259 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	ABHD17B	Q5VST6	288 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	NUGGC	Q68CJ6	796 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	NAPEPLD	Q6IQ20	393 aa		4.1	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms