RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 LRRN4Q8WUT4 740 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 SMIM14Q96QK8 99 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 NUDCD1Q96RS6 583 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 MGME1Q9BQP7 344 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 APOOQ9BUR5 198 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 DUSP23Q9BVJ7 150 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 C1QTNF7Q9BXJ2 289 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 CTTNBP2NLQ9P2B4 639 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 SPASTQ9UBP0 616 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 B4GALT6Q9UBX8 382 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 APOBEC3BQ9UH17 382 aaKnown RBP10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 SALL4Q9UJQ4 1053 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 CLCA2Q9UQC9 943 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 PCDHB1Q9Y5F3 818 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 CELSR3Q9NYQ7 3312 aa10.49□□□□□ -0.73
PRPF40B-204ENST00000527253 ITPR1Q14643 2758 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 ADAMTS20P59510 1910 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 SHROOM3Q8TF72 1996 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 A0A0U1RQS6 177 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 CPED1A4D0V7 1026 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 LMO7DNF2Z398 122 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 TLX3O43711 291 aaPredicted RBP10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 MFSD11O43934 449 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 MAP3K6O95382 1288 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 GJC1P36383 396 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 PEX5P50542 639 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 HK3P52790 923 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 PPARDQ03181 441 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 SLC10A2Q12908 348 aaPredicted RBP10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 MTM1Q13496 603 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 ZNF235Q14590 738 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 NFATC4Q14934 902 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 RTP5Q14D33 572 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 PAFAH1B3Q15102 231 aaKnown RBP10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 TCEA2Q15560 299 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 HS1BP3Q53T59 392 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 ANKRD20A8PQ5CZ79 823 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 PERM1Q5SV97 790 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 FAM182AQ5T1J6 154 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 FAXCQ5TGI0 409 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 ZCCHC8Q6NZY4 707 aaKnown RBP10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 ENPP7Q6UWV6 458 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 HID1Q8IV36 788 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 SLC35F3Q8IY50 421 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 ATPAF2Q8N5M1 289 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 RNF214Q8ND24 703 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 IFI44Q8TCB0 444 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 BTN2A2Q8WVV5 523 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 HNRNPLLQ8WVV9 542 aaKnown RBP10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 SPOCK2Q92563 424 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 RAPGEF5Q92565 580 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 FAF2Q96CS3 445 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 TBATAQ96M53 351 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 COQ10AQ96MF6 247 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 BOCQ9BWV1 1114 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 LGR4Q9BXB1 951 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 NRSN2Q9GZP1 204 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 TSPY26PQ9H489 355 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 SCUBE2Q9NQ36 999 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 RCOR3Q9P2K3 495 aaPredicted RBP10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 LHX6Q9UPM6 363 aa10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 COL27A1Q8IZC6 1860 aaPredicted RBP10.48□□□□□ -0.73
PRPF40B-204ENST00000527253 LRP4O75096 1905 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 A0A1W2PNU3 283 aaPredicted RBP10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 SSU72P8A0A1W2PR75 194 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 EME2A4GXA9 379 aaPredicted RBP10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 TMEM202A6NGA9 273 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 TMEM110-MUSTN1A8MSY1 372 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 GP1BAP07359 652 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 PDHA1P08559 390 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 H2AFZP0C0S5 128 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 TMEM253P0C7T8 217 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 HOXB3P14651 431 aaPredicted RBP10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 TGM2P21980 687 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 LHCGRP22888 699 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 TRIM23P36406 574 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 HSPA9P38646 679 aaKnown RBP10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 MMP13P45452 471 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 DUSP3P51452 185 aaPredicted RBP10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 SRP54P61011 504 aaKnown RBP10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 POLR2LP62875 67 aaKnown RBP10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 GBE1Q04446 702 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 GALNT2Q10471 571 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 CNGA3Q16281 694 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 HADHQ16836 314 aaKnown RBP10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 COL28A1Q2UY09 1125 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 C6orf132Q5T0Z8 1188 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 MARC1Q5VT66 337 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 CRTC1Q6UUV9 634 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 RFLNAQ6ZTI6 216 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 H2AFVQ71UI9 128 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 EFL1Q7Z2Z2 1120 aaKnown RBP10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 RD3Q7Z3Z2 195 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 HSD11B1LQ7Z5J1 315 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 SFTPA2Q8IWL1 248 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 KCTD6Q8NC69 237 aa10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 PDCD6IPQ8WUM4 868 aaKnown RBP10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 PTCD2Q8WV60 388 aaKnown RBP10.47□□□□□ -0.73
PRPF40B-204ENST00000527253 PIH1D2Q8WWB5 315 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms