RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ANKRD49Q8WVL7 239 aa21.32■■□□□ 1
VPS28-205ENST00000526204 TOP1MTQ969P6 601 aa21.32■■□□□ 1
VPS28-205ENST00000526204 ASB9Q96DX5 294 aa21.32■■□□□ 1
VPS28-205ENST00000526204 PHF21BQ96EK2 531 aa21.32■■□□□ 1
VPS28-205ENST00000526204 GCNAQ96QF7 691 aa21.32■■□□□ 1
VPS28-205ENST00000526204 TRPC7Q9HCX4 862 aa21.32■■□□□ 1
VPS28-205ENST00000526204 RGS18Q9NS28 235 aa21.32■■□□□ 1
VPS28-205ENST00000526204 RIMS3Q9UJD0 308 aa21.32■■□□□ 1
VPS28-205ENST00000526204 FIS1Q9Y3D6 152 aa21.32■■□□□ 1
VPS28-205ENST00000526204 TRAF6Q9Y4K3 522 aa21.32■■□□□ 1
VPS28-205ENST00000526204 DRGXA6NNA5 263 aa21.31■■□□□ 1
VPS28-205ENST00000526204 TXNDC9O14530 226 aa21.31■■□□□ 1
VPS28-205ENST00000526204 RAMP2O60895 175 aa21.31■■□□□ 1
VPS28-205ENST00000526204 C1QTNF8P60827 252 aa21.31■■□□□ 1
VPS28-205ENST00000526204 PSME3P61289 254 aa21.31■■□□□ 1
VPS28-205ENST00000526204 NFKB2Q00653 900 aa21.31■■□□□ 1
VPS28-205ENST00000526204 BTG3Q14201 252 aaPredicted RBP21.31■■□□□ 1
VPS28-205ENST00000526204 FASTKQ14296 549 aaKnown RBP21.31■■□□□ 1
VPS28-205ENST00000526204 POLD3Q15054 466 aaPredicted RBP21.31■■□□□ 1
VPS28-205ENST00000526204 LIN52Q52LA3 116 aa21.31■■□□□ 1
VPS28-205ENST00000526204 FBXL22Q6P050 247 aa21.31■■□□□ 1
VPS28-205ENST00000526204 GK5Q6ZS86 529 aa21.31■■□□□ 1
VPS28-205ENST00000526204 MARVELD2Q8N4S9 558 aa21.31■■□□□ 1
VPS28-205ENST00000526204 SPDYE1Q8NFV5 336 aaPredicted RBP21.31■■□□□ 1
VPS28-205ENST00000526204 UNC93B1Q9H1C4 597 aa21.31■■□□□ 1
VPS28-205ENST00000526204 GSTO2Q9H4Y5 243 aa21.31■■□□□ 1
VPS28-205ENST00000526204 RAB26Q9ULW5 256 aa21.31■■□□□ 1
VPS28-205ENST00000526204 TBC1D30Q9Y2I9 924 aa21.31■■□□□ 1
VPS28-205ENST00000526204 PRSS51A0A1B0GVH4 220 aa21.31■■□□□ 1
VPS28-205ENST00000526204 STX16-NPEPL1H3BU86 382 aa21.31■■□□□ 1
VPS28-205ENST00000526204 LDB2O43679 373 aa21.31■■□□□ 1
VPS28-205ENST00000526204 PBX3P40426 434 aa21.31■■□□□ 1
VPS28-205ENST00000526204 GPR15P49685 360 aa21.31■■□□□ 1
VPS28-205ENST00000526204 ARSDP51689 593 aa21.31■■□□□ 1
VPS28-205ENST00000526204 PLK1P53350 603 aa21.31■■□□□ 1
VPS28-205ENST00000526204 CDKN2DP55273 166 aa21.31■■□□□ 1
VPS28-205ENST00000526204 ACVR1Q04771 509 aa21.31■■□□□ 1
VPS28-205ENST00000526204 CACNB2Q08289 660 aaPredicted RBP21.31■■□□□ 1
VPS28-205ENST00000526204 NAIF1Q69YI7 327 aaPredicted RBP21.31■■□□□ 1
VPS28-205ENST00000526204 RNF148Q8N7C7 305 aa21.31■■□□□ 1
VPS28-205ENST00000526204 PIDD1Q9HB75 910 aa21.31■■□□□ 1
VPS28-205ENST00000526204 ADA2Q9NZK5 511 aa21.31■■□□□ 1
VPS28-205ENST00000526204 SUCOQ9UBS9 1254 aaKnown RBP21.31■■□□□ 1
VPS28-205ENST00000526204 SARDHQ9UL12 918 aa21.31■■□□□ 1
VPS28-205ENST00000526204 PCDHGA7Q9Y5G6 932 aa21.31■■□□□ 1
VPS28-205ENST00000526204 MYLKQ15746 1914 aa21.3■■□□□ 1
VPS28-205ENST00000526204 FAM92AA1XBS5 289 aa21.3■■□□□ 1
VPS28-205ENST00000526204 B4GALT3O60512 393 aa21.3■■□□□ 1
VPS28-205ENST00000526204 MYCNP04198 464 aaPredicted RBP21.3■■□□□ 1
VPS28-205ENST00000526204 ATXN1LP0C7T5 689 aaKnown RBP21.3■■□□□ 1
VPS28-205ENST00000526204 GRK4P32298 578 aa21.3■■□□□ 1
VPS28-205ENST00000526204 MSX2P35548 267 aaPredicted RBP21.3■■□□□ 1
VPS28-205ENST00000526204 HSPA13P48723 471 aa21.3■■□□□ 1
VPS28-205ENST00000526204 CLCN2P51788 898 aa21.3■■□□□ 1
VPS28-205ENST00000526204 YBEYP58557 167 aaPredicted RBP21.3■■□□□ 1
VPS28-205ENST00000526204 USP46P62068 366 aa21.3■■□□□ 1
VPS28-205ENST00000526204 CRHR2Q13324 411 aa21.3■■□□□ 1
VPS28-205ENST00000526204 SERINC3Q13530 473 aa21.3■■□□□ 1
VPS28-205ENST00000526204 IHHQ14623 411 aa21.3■■□□□ 1
VPS28-205ENST00000526204 TRIM71Q2Q1W2 868 aaKnown RBP21.3■■□□□ 1
VPS28-205ENST00000526204 GPR158Q5T848 1215 aa21.3■■□□□ 1
VPS28-205ENST00000526204 UGT2A3Q6UWM9 527 aa21.3■■□□□ 1
VPS28-205ENST00000526204 ISCA2Q86U28 154 aa21.3■■□□□ 1
VPS28-205ENST00000526204 KLHDC9Q8NEP7 349 aa21.3■■□□□ 1
VPS28-205ENST00000526204 ZFAND2BQ8WV99 257 aa21.3■■□□□ 1
VPS28-205ENST00000526204 IGSF8Q969P0 613 aa21.3■■□□□ 1
VPS28-205ENST00000526204 POLR1EQ9GZS1 481 aaKnown RBP21.3■■□□□ 1
VPS28-205ENST00000526204 ALG9Q9H6U8 611 aa21.3■■□□□ 1
VPS28-205ENST00000526204 RRAGCQ9HB90 399 aa21.3■■□□□ 1
VPS28-205ENST00000526204 EPOP01588 193 aa21.29■■□□□ 1
VPS28-205ENST00000526204 CAPNS1P04632 268 aa21.29■■□□□ 1
VPS28-205ENST00000526204 HLA-DPA1P20036 260 aa21.29■■□□□ 1
VPS28-205ENST00000526204 YWHAQP27348 245 aa21.29■■□□□ 1
VPS28-205ENST00000526204 ATP4BP51164 291 aa21.29■■□□□ 1
VPS28-205ENST00000526204 FCGRTP55899 365 aa21.29■■□□□ 1
VPS28-205ENST00000526204 PDAP1Q13442 181 aaKnown RBP21.29■■□□□ 1
VPS28-205ENST00000526204 LRP8Q14114 963 aa21.29■■□□□ 1
VPS28-205ENST00000526204 TRIM25Q14258 630 aaKnown RBP21.29■■□□□ 1
VPS28-205ENST00000526204 AGKQ53H12 422 aa21.29■■□□□ 1
VPS28-205ENST00000526204 ZNF678Q5SXM1 525 aa21.29■■□□□ 1
VPS28-205ENST00000526204 RASIP1Q5U651 963 aa21.29■■□□□ 1
VPS28-205ENST00000526204 RAP1GAP2Q684P5 730 aa21.29■■□□□ 1
VPS28-205ENST00000526204 MRNIPQ6NTE8 343 aa21.29■■□□□ 1
VPS28-205ENST00000526204 SLC24A5Q71RS6 500 aa21.29■■□□□ 1
VPS28-205ENST00000526204 TICAM1Q8IUC6 712 aa21.29■■□□□ 1
VPS28-205ENST00000526204 COLGALT2Q8IYK4 626 aa21.29■■□□□ 1
VPS28-205ENST00000526204 GPR150Q8NGU9 434 aa21.29■■□□□ 1
VPS28-205ENST00000526204 ASB2Q96Q27 587 aa21.29■■□□□ 1
VPS28-205ENST00000526204 SLC25A23Q9BV35 468 aa21.29■■□□□ 1
VPS28-205ENST00000526204 COPS7BQ9H9Q2 264 aaPredicted RBP21.29■■□□□ 1
VPS28-205ENST00000526204 TNFRSF12AQ9NP84 129 aa21.29■■□□□ 1
VPS28-205ENST00000526204 CACNA2D2Q9NY47 1150 aa21.29■■□□□ 1
VPS28-205ENST00000526204 SYN3O14994 580 aa21.29■■□□□ 1
VPS28-205ENST00000526204 GLP2RO95838 553 aa21.29■■□□□ 1
VPS28-205ENST00000526204 FGF1P05230 155 aa21.29■■□□□ 1
VPS28-205ENST00000526204 SNRPB2P08579 225 aaKnown RBP21.29■■□□□ 1
VPS28-205ENST00000526204 OR1G1P47890 313 aa21.29■■□□□ 1
VPS28-205ENST00000526204 ROR2Q01974 943 aaKnown RBP21.29■■□□□ 1
VPS28-205ENST00000526204 MTA1Q13330 715 aa21.29■■□□□ 1
VPS28-205ENST00000526204 CCSAPQ6IQ19 270 aaPredicted RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms