RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 KIAA1143Q96AT1 154 aaPredicted RBP11.71□□□□□ -0.53
SDCBP-211ENST00000523441 ISG20Q96AZ6 181 aaKnown RBP11.71□□□□□ -0.53
SDCBP-211ENST00000523441 HMCESQ96FZ2 354 aa11.71□□□□□ -0.53
SDCBP-211ENST00000523441 C1orf74Q96LT6 269 aa11.71□□□□□ -0.53
SDCBP-211ENST00000523441 CEP63Q96MT8 703 aa11.71□□□□□ -0.53
SDCBP-211ENST00000523441 CATSPER2Q96P56 530 aa11.71□□□□□ -0.53
SDCBP-211ENST00000523441 PCDH12Q9NPG4 1184 aa11.71□□□□□ -0.53
SDCBP-211ENST00000523441 TMEM9Q9P0T7 183 aa11.71□□□□□ -0.53
SDCBP-211ENST00000523441 ZNF212Q9UDV6 495 aa11.71□□□□□ -0.53
SDCBP-211ENST00000523441 TUBD1Q9UJT1 453 aa11.71□□□□□ -0.53
SDCBP-211ENST00000523441 MRPS18BQ9Y676 258 aaKnown RBP11.71□□□□□ -0.53
SDCBP-211ENST00000523441 TRBV23OR9-2A0A075B6M9 112 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 LOC101059948A0A1B0GTJ6 334 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.7□□□□□ -0.54
SDCBP-211ENST00000523441 TOR1BO14657 336 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 VPS4BO75351 444 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 SMC2O95347 1197 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 F9P00740 461 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 SLC9A1P19634 815 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 AK4P27144 223 aaPredicted RBP11.7□□□□□ -0.54
SDCBP-211ENST00000523441 FLT3P36888 993 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 SNX16P57768 344 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 KLRB1Q12918 225 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 SEPT6Q14141 434 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 MEA1Q16626 185 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 TMEM52BQ4KMG9 183 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 TAF3Q5VWG9 929 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 ZNF787Q6DD87 383 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 OGFOD3Q6PK18 319 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 SLC30A9Q6PML9 568 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 EMC1Q8N766 993 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 GPBAR1Q8TDU6 330 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 APOBEC4Q8WW27 367 aaKnown RBP11.7□□□□□ -0.54
SDCBP-211ENST00000523441 NELFBQ8WX92 580 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 VOPP1Q96AW1 172 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 LGR4Q9BXB1 951 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 TTYH3Q9C0H2 523 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 CARS2Q9HA77 564 aaKnown RBP11.7□□□□□ -0.54
SDCBP-211ENST00000523441 RRN3Q9NYV6 651 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 VPS4AQ9UN37 437 aa11.7□□□□□ -0.54
SDCBP-211ENST00000523441 ITPR2Q14571 2701 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 GOLGA6CA6NDK9 693 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 GOLGA6BA6NDN3 693 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 FAM72CH0Y354 149 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 BIN1O00499 593 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 PMM2O15305 246 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 NUDT21O43809 227 aaKnown RBP11.69□□□□□ -0.54
SDCBP-211ENST00000523441 RAMP2O60895 175 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 ECEL1O95672 775 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 GOLGA6DP0CG33 693 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 PNLIPP16233 465 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 CD1CP29017 333 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 GEMIN4P57678 1058 aaKnown RBP11.69□□□□□ -0.54
SDCBP-211ENST00000523441 PTK2Q05397 1052 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 ELP6Q0PNE2 266 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 SLC25A52Q3SY17 297 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 ARTNQ5T4W7 220 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 DCAF12Q5T6F0 453 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 FHL5Q5TD97 284 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 FAM72AQ5TYM5 149 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 DENND2CQ68D51 928 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 FAM72DQ6L9T8 149 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 TRNP1Q6NT89 227 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 ERAP2Q6P179 960 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 SLC47A2Q86VL8 602 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 FAM72BQ86X60 149 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 TRIM59Q8IWR1 403 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 EFCAB3Q8N7B9 438 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 AGBL5Q8NDL9 886 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 KIAA1524Q8TCG1 905 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 GSDMAQ96QA5 445 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 KLC2Q9H0B6 622 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 GOLGA6AQ9NYA3 693 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 OR12D3Q9UGF7 316 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 KLHL3Q9UH77 587 aa11.69□□□□□ -0.54
SDCBP-211ENST00000523441 AJAP1Q9UKB5 411 aaPredicted RBP11.69□□□□□ -0.54
SDCBP-211ENST00000523441 SPENQ96T58 3664 aaKnown RBP11.69□□□□□ -0.54
SDCBP-211ENST00000523441 TTLL8A6PVC2 850 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 HGSO14964 777 aaPredicted RBP11.68□□□□□ -0.54
SDCBP-211ENST00000523441 RNF224P0DH78 156 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 TCN2P20062 427 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 CSF2RBP32927 897 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 ETFBP38117 255 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 GNPDA1P46926 289 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 LIMK2P53671 638 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 MTM1Q13496 603 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 ACOX1Q15067 660 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 UGP2Q16851 508 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 C15orf59Q2T9L4 293 aaPredicted RBP11.68□□□□□ -0.54
SDCBP-211ENST00000523441 TRIM65Q6PJ69 517 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 ENOSF1Q7L5Y1 443 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 PLPP6Q8IY26 295 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 NLGN4XQ8N0W4 816 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 ZNF397Q8NF99 534 aaPredicted RBP11.68□□□□□ -0.54
SDCBP-211ENST00000523441 NLGN4YQ8NFZ3 816 aaPredicted RBP11.68□□□□□ -0.54
SDCBP-211ENST00000523441 STARD8Q92502 1023 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 DHTKD1Q96HY7 919 aaPredicted RBP11.68□□□□□ -0.54
SDCBP-211ENST00000523441 SLC45A3Q96JT2 553 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 HAPLN3Q96S86 360 aa11.68□□□□□ -0.54
SDCBP-211ENST00000523441 CDH19Q9H159 772 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms