RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 UBE2CO00762 179 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 TOP3BO95985 862 aaKnown RBP7.64□□□□□ -1.19
LSM1-202ENST00000520286 HOXA13P31271 388 aaPredicted RBP7.64□□□□□ -1.19
LSM1-202ENST00000520286 SHMT1P34896 483 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 RFC1P35251 1148 aaPredicted RBP7.64□□□□□ -1.19
LSM1-202ENST00000520286 TERF1P54274 439 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 TFF2Q03403 129 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 AIMP1Q12904 312 aaKnown RBP7.64□□□□□ -1.19
LSM1-202ENST00000520286 SLC9C1Q4G0N8 1177 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 PLEKHO1Q53GL0 409 aaPredicted RBP7.64□□□□□ -1.19
LSM1-202ENST00000520286 HMBOX1Q6NT76 420 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 CRIP3Q6Q6R5 217 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 CLEC17AQ6ZS10 378 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 KDELC2Q7Z4H8 507 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 ADGRA1Q86SQ6 560 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 NOXA1Q86UR1 476 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 AVL9Q8NBF6 648 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 MCPH1Q8NEM0 835 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.64□□□□□ -1.19
LSM1-202ENST00000520286 NDST4Q9H3R1 872 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 PLK3Q9H4B4 646 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 PNRC2Q9NPJ4 139 aaKnown RBP7.64□□□□□ -1.19
LSM1-202ENST00000520286 SLC35C2Q9NQQ7 365 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 RNF146Q9NTX7 359 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 SETD4Q9NVD3 440 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 TAB2Q9NYJ8 693 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 CPSF2Q9P2I0 782 aaKnown RBP7.64□□□□□ -1.19
LSM1-202ENST00000520286 NDRG3Q9UGV2 375 aa7.64□□□□□ -1.19
LSM1-202ENST00000520286 PTRH2Q9Y3E5 179 aaKnown RBP7.64□□□□□ -1.19
LSM1-202ENST00000520286 IQSEC2Q5JU85 1478 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 OR2A25A4D2G3 310 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 GLOD5A6NK44 160 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 HSPB6O14558 160 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 TPPPO94811 219 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 RPN1P04843 607 aaKnown RBP7.63□□□□□ -1.19
LSM1-202ENST00000520286 SRPRAP08240 638 aaKnown RBP7.63□□□□□ -1.19
LSM1-202ENST00000520286 ADRB1P08588 477 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 GLULP15104 373 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 PROZP22891 400 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 UBXN2AP68543 259 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 ROR1Q01973 937 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 TNFAIP1Q13829 316 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 NAB2Q15742 525 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 MIDNQ504T8 468 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 DNAAF5Q86Y56 855 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 IL17RCQ8NAC3 791 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 POMGNT2Q8NAT1 580 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 GCNAQ96QF7 691 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 OR2A14Q96R47 310 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 ABHD1Q96SE0 405 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 SH2D3AQ9BRG2 576 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 C1QTNF5Q9BXJ0 243 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 IFIH1Q9BYX4 1025 aaKnown RBP7.63□□□□□ -1.19
LSM1-202ENST00000520286 KLHL4Q9C0H6 718 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 CDT1Q9H211 546 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 MVB12BQ9H7P6 319 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 MAGEE1Q9HCI5 957 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 SPAG4Q9NPE6 437 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 MARCH4Q9P2E8 410 aaPredicted RBP7.63□□□□□ -1.19
LSM1-202ENST00000520286 SEC63Q9UGP8 760 aaKnown RBP7.63□□□□□ -1.19
LSM1-202ENST00000520286 A3GALT2U3KPV4 340 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 LTBP4Q8N2S1 1624 aa7.63□□□□□ -1.19
LSM1-202ENST00000520286 KIR2DS5A0A0G2JLQ3 304 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 A0A0U1RQF3 1178 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 F8W810 466 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 KIR2DS3K7RE56 304 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 RAMP2O60895 175 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 C1QL1O75973 258 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 ETFAP13804 333 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 COPB2P35606 906 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 CXCR3P49682 368 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 CLCN3P51790 818 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 CFHR1Q03591 330 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 CAPSQ13938 189 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 PLCB4Q15147 1175 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 PRAMEF19Q5SWL8 479 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 C6orf141Q5SZD1 244 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 C1QTNF12Q5T7M4 302 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 MEX3CQ5U5Q3 659 aaKnown RBP7.62□□□□□ -1.19
LSM1-202ENST00000520286 NCAPH2Q6IBW4 605 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 QSOX2Q6ZRP7 698 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 UBE2Q1Q7Z7E8 422 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 KBTBD6Q86V97 674 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 HORMAD2Q8N7B1 307 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 FBXL8Q96CD0 374 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 RABEP2Q9H5N1 569 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 LTB4R2Q9NPC1 389 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.62□□□□□ -1.19
LSM1-202ENST00000520286 INSL6Q9Y581 213 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 SLC4A4Q9Y6R1 1079 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 MAU2Q9Y6X3 613 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 FRMPD1Q5SYB0 1578 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 FANCAO15360 1455 aa7.62□□□□□ -1.19
LSM1-202ENST00000520286 CEP162Q5TB80 1403 aa7.61□□□□□ -1.19
LSM1-202ENST00000520286 WDR17Q8IZU2 1322 aa7.61□□□□□ -1.19
LSM1-202ENST00000520286 ABCA9Q8IUA7 1624 aa7.61□□□□□ -1.19
LSM1-202ENST00000520286 PRPF4O43172 522 aaKnown RBP eCLIP7.61□□□□□ -1.19
LSM1-202ENST00000520286 KLK8O60259 260 aa7.61□□□□□ -1.19
LSM1-202ENST00000520286 AGAP20933 346 aa7.61□□□□□ -1.19
LSM1-202ENST00000520286 PON1P27169 355 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms